R Observatory: Metrics for webSDM version 1.1-5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

webSDM

1.1-5Package record

Including Known Interactions in Species Distribution Models

0packages depend

2.5Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Giovanni PoggiatoCRAN page ↗GitHub ↗Website ↗Issues ↗

A collection of tools to fit and work with trophic Species Distribution Models. Trophic Species Distribution Models combine knowledge of trophic interactions with Bayesian structural equation models that model each species as a function of its prey (or predators) and environmental conditions. It exploits the topological ordering of the known trophic interaction network to predict species distribution in space and/or time, where the prey (or predator) distribution is unavailable. The method implemented by the package is described in Poggiato, Andréoletti, Pollock and Thuiller (2022) doi:10.22541/au.166853394.45823739/v1.

Changes in 1.1-5

Correct bug about Orcid codes

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("webSDM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("giopogg/webSDM")

Development version from giopogg/webSDM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-websdm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-webSDM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-webSDM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 12.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-09-09
ERROR12 OK, 1 ERROR2026-09-04
OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-07-29

Show 4 earlier changesHide 4 earlier changes

ERROR12 OK, 1 ERROR2026-07-27
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1-5

README· In the repository, left out of the releaseVignettesYes · 3 · staticNEWSYes · 100% structured · mentions 1.1-5Citation fileNoWebsiteYes · pkgdown

Help pages: 25 (1 internal)includes a package overview page
Examples that run: 100%22 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 16%

Vignettes (3)

How these are measured

Downloads

2.5K

CRAN downloads in the past year

Rank #15,124 · ~7/day · ~211/mo

Releases R versions

Daily download trend is not available in this view yet.

33230 days

78990 days

2.5K1 year

Compare downloads with other packages →

Also on73 r2u8 autocran

How downloads are counted

Repository

giopogg/websdm ↗Account: giopogg

19Stars

2Forks

0Open issues

0Open PRs

2Releases

123Commits

2Commit identities

123 commits · Last activity 2024-06-24 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-05-04 · 172026-07-07 · 19

How these are measured

PracticesBeta

4 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/giopogg/websdm on 2026-10-11.

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2024-06-24

pkgdown site last built 2023-09-18, before release 1.1-5 (2024-06-24)

CRAN release process (1)

cran-comments.md

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

24 external dependencies (excludes base and recommended)

Installing webSDM adds 145 packages (66 with compiled code, 156 MB of source tarballs). Heaviest: BH 14 MB, stringi 11 MB, ggplot2 6.0 MB.

Depends (1)

R >= 3.5.0

Imports (15)

GGally abind bayesplot brms broom.mixed dismo dplyr ggplot2 glmnet gridExtra igraph jtools rstanarm rstantoolsutils

LinkingTo (0)

none

Suggests (10)

knitr rmarkdown reshape2 devtools loo randomForest network sna scales intergraph

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Giovanni Poggiato

Jérémy Andréoletti

Author

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1-5Latest
record
2024-06-24 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
1.1-4
record
2023-09-18 · diff ↗ ·
removed 1 export
predictFundamental

added 1 export
predictPotential
R
R 4.3.0 released · 2023-04-21
1.1-3
record
2023-03-14 · diff ↗ ·
removed 1 export
compute_TL_laplacian
1.1-1
record
2022-11-25
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-11-25
Total releases: 4 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 13 KB / 3 files
Download size: 1.2 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("webSDM")

Format

Poggiato, G., & Andréoletti, J. (2024). webSDM: Including Known Interactions in Species Distribution Models (Version 1.1-5) [Computer software]. https://doi.org/10.32614/CRAN.package.webSDM

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for webSDM version 1.1-5 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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