R Observatory: Metrics for vegclust version 2.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

vegclust

2.0.3

Fuzzy Clustering of Vegetation Data

5packages depend

25.3Kdownloads / year

8.0%test coverage

13/13checks pass

Overview

About

Maintained by Miquel De CáceresFirst published 2012-10-2911 releasesCRAN page ↗GitHub ↗

A set of functions to: (1) perform fuzzy clustering of vegetation data (De Caceres et al, 2010) doi:10.1111/j.1654-1103.2010.01211.x; (2) to assess ecological community similarity on the basis of structure and composition (De Caceres et al, 2013) doi:10.1111/2041-210X.12116.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("vegclust", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("emf-creaf/vegclust")

Development version from emf-creaf/vegclust. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-vegclust

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-vegclust

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-vegclust

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.4 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.01

8.0%

Coverage · measured lines

100%

Documentation · exports

1

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-06-08
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 97%
Return-value docs: 100%
References docs: 52%

Downloads

25.3K

CRAN downloads in the past year

Rank #3,321 · ~69/day · ~2.1K/mo

Releases R versions

Daily download trend is not available in this view yet.

87130 days

3.2K90 days

25.3K1 year

Compare downloads with other packages →

Also on517 r2u28 autocran1.2K conda_forge

Repository

GitHub ↗ emf-creaf/vegclust

2Stars

2Forks

0Open issues

0Open PRs

1Releases

155Commits

2Contributors

155 commits · Last activity 2025-05-21

Stars over time

2020-05-28 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/emf-creaf/vegclust on 2026-08-23.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

Docs source (1)

README.Rmd

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (1)

vegan

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

5direct

4indirect

EcotoneFinder WeightedCluster ecotraj inaparc ppclust

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Miquel De Cáceres

Author, Maintainer · added in 1.7.1

Authors (1)

Miquel De Cáceres

Author, Maintainer · added in 1.7.1

Listed in earlier versions (1)

Miquel De Caceres

no longer listed · 1.5.1 to 1.6.5

Package Timeline

11 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.0.3Latest
2025-05-19 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
2.0.2
2022-08-25 · diff ↗
R
R 4.2.0 released · 2022-04-22
2.0.0
2021-06-01 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.7.7
2019-01-08 · diff ↗
1.7.4
2018-05-29 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.7.1
2017-09-17 · diff ↗
R
R 3.4.0 released · 2017-04-21

Show 10 earlier events

1.6.5
2016-12-21 · diff ↗
1.6.4
2016-05-19 · diff ↗
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
1.6.3
2013-11-20 · diff ↗
R
R 3.0.0 released · 2013-04-03
1.6.0
2013-03-06 · diff ↗
1.5.1
2012-10-29
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-10-29
Total releases: 11 / 14 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.4.0
Bundled data: 3.7 KB / 3 files
Download size: 547 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("vegclust")

Format

De Cáceres, M. (2025). vegclust: Fuzzy Clustering of Vegetation Data (Version 2.0.3) [Computer software]. https://doi.org/10.32614/CRAN.package.vegclust

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for vegclust version 2.0.3 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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