R Observatory: Metrics for vegclust version 2.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

vegclust

2.0.3Package record

Fuzzy Clustering of Vegetation Data

2packages dependsuggested by 3

19.5Kdownloads / year

8.0%test coverage

13/13flavors OK

Overview

About

Maintained by Miquel De CáceresCRAN page ↗GitHub ↗Website ↗Issues ↗

A set of functions to: (1) perform fuzzy clustering of vegetation data (De Caceres et al, 2010) doi:10.1111/j.1654-1103.2010.01211.x; (2) to assess ecological community similarity on the basis of structure and composition (De Caceres et al, 2013) doi:10.1111/2041-210X.12116.

Changes in 2.0.3

Package documentation in Roxygen

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("vegclust", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("emf-creaf/vegclust")

Development version from emf-creaf/vegclust. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-vegclust

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-vegclust

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-vegclust

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.4 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
WARNING12 OK, 1 WARNING2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.3

README· In the repository, left out of the releaseVignettesYes · 2 · dynamicNEWSYes · 100% structured · mentions 2.0.3Citation fileYes · cites a publicationWebsiteYes · pkgdown

Help pages: 29 (1 internal)includes a package overview page
Examples that run: 100%25 run in a plain check
Exported functions with examples: 91%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 52%

Vignettes (2)

How these are measured

Downloads

19.5K

CRAN downloads in the past year

Rank #3,112 · ~53/day · ~1.6K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.7K30 days

4K90 days

19.5K1 year

Compare downloads with other packages →

Also on477 r2u3 autocran1.1K conda_forge

How downloads are counted

Repository

emf-creaf/vegclust ↗Organization: emf-creaf

2Stars

2Forks

0Open issues

0Open PRs

1Releases

155Commits

2Commit identities

155 commits · Last activity 2025-05-19

Responsiveness

How these are sampled

PRs merged (all time): 50%
Median days to close, 50 most recently updated closed issues: 910
Median days to close, 50 most recently updated closed PRs: 113

Stars over time

2020-05-28 · 22026-07-07 · 2

How these are measured

PracticesBeta

6 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/emf-creaf/vegclust on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2025-05-21

pkgdown site last built 2025-05-21

Reproducibility and dev environment (1)

data-raw/

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Installing vegclust adds 2 packages (1 with compiled code, 1.5 MB of source tarballs). Heaviest: vegan 1.4 MB, permute 118 KB.

Depends (1)

R >= 3.4.0

Imports (1)

vegan

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

4indirect

Imports 2

Suggested by 3

Depends, Imports or LinkingTo, most downloaded first

WeightedCluster EcotoneFinder

Suggests, most downloaded first

inaparc ecotraj ppclust

How these are counted

Code & Tests

Datasets

People & History

People (1)

Miquel De Cáceres

Author, Maintainer · added in 1.7.1

Maintainer since 1.5.1 (2009)

Listed in earlier versions (1)

Miquel De Caceres

no longer listed · 1.5.1 to 1.6.5

Releases (11)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
2.0.3Latest
record
2025-05-19 · current release · diff ↗ ·
removed 1 export
pattern:.

added 35 exports
CAP, CAP2matrix, CAPcenters, CAPquantile, CAS, CAS2matrix, CAScenters, CASmargin, CASquantile, as.memb, as.stratifiedvegdata, as.vegclust, clustcentroid, clustconst, clustmedoid, clustvar, concordance, conformveg, crossmemb, defuzzify, hcr, hier.vegclust, hier.vegclustdist, incr.vegclust, interclustdist, random.vegclust, random.vegclustdist, relate.levels, stratifyvegdata, vegclass and 5 more
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
2.0.2
record
2022-08-25 · diff ↗
R
R 4.2.0 released · 2022-04-22
2.0.0
record
2021-06-01 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.7.7
record
2019-01-08 · diff ↗
1.7.4
record
2018-05-29 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.7.1
record
2017-09-17 · diff ↗
R
R 3.4.0 released · 2017-04-21

Show 10 earlier eventsHide 10 earlier events

1.6.5
record
2016-12-21 · diff ↗
1.6.4
record
2016-05-19 · diff ↗
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
1.6.3
record
2013-11-20 · diff ↗
R
R 3.0.0 released · 2013-04-03
1.6.0
record
2013-03-06 · diff ↗
1.5.1
record
2012-10-29
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-10-29
Total releases: 11 / 14 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.4.0
Bundled data: 3.7 KB / 3 files
Download size: 547 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("vegclust")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1111/j.1654-1103.2010.01211.x, 10.1111/2041-210x.12116.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for vegclust version 2.0.3 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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