R Observatory: Metrics for tsvio version 1.0.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

tsvio

1.0.6

Simple Utilities for Tab-Separated-Value (TSV) Files

1packages depend

7.5Kdownloads / year

72.6%test coverage

13/13checks pass

Overview

About

Maintained by Mary A RohrdanzFirst published 2023-10-042 releasesCRAN page ↗GitHub ↗

Utilities for rapidly loading specified rows and/or columns of data from large tab-separated value (tsv) files (large: e.g. 1 GB file of 10000 x 10000 matrix). 'tsvio' is an R wrapper to 'C' code that creates an index file for the rows of the tsv file, and uses that index file to collect rows and/or columns from the tsv file without reading the whole file into memory.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("tsvio", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("MD-Anderson-Bioinformatics/tsvio")

Development version from MD-Anderson-Bioinformatics/tsvio. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tsvio

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-tsvio

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-tsvio

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.5 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 1.10

72.6%

Coverage · measured lines

100%

Documentation · exports

0

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-06-08
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

7.5K

CRAN downloads in the past year

Rank #6,521 · ~21/day · ~624/mo

Releases R versions

Daily download trend is not available in this view yet.

16630 days

1.3K90 days

7.5K1 year

Compare downloads with other packages →

Also on390 r2u12 autocran

Repository

GitHub ↗ md-anderson-bioinformatics/tsvio

1Stars

0Forks

0Open issues

0Open PRs

0Releases

70Commits

2Contributors

70 commits · Last activity 2024-07-24

Stars over time

2023-10-05 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

Checks run against github.com/md-anderson-bioinformatics/tsvio on 2026-08-16.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (0)

none

LinkingTo (0)

none

Suggests (3)

testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

NGCHM

Code & Tests

People & History

People (6)

Maintainer (1)

Mary A Rohrdanz

Contributor, Maintainer

Authors (1)

Bradley M Broom

Author

Contributors (4)

Mary A Rohrdanz

Contributor, Maintainer

Paul Hsieh

Contributor

James Melott

Contributor

Chris Wakefield

Contributor

Copyright holders (1)

MD Anderson Cancer Center

Copyright holder

Listed in earlier versions (2)

Broom

no longer listed · 1.0.4 to 1.0.6

Rohrdanz

no longer listed · 1.0.4 to 1.0.6

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.6Latest
2023-11-28 · current release · diff ↗
1.0.4
2023-10-04
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-10-04
Total releases: 2 / 3 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.4.0
Download size: 24 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("tsvio")

Format

Rohrdanz, M. A., MD Anderson Cancer Center, Broom, B. M., Hsieh, P., Melott, J., & Wakefield, C. (2023). tsvio: Simple Utilities for Tab-Separated-Value (TSV) Files (Version 1.0.6) [Computer software]. https://doi.org/10.32614/CRAN.package.tsvio

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for tsvio version 1.0.6 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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