R Observatory: Metrics for transreg version 1.0.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

transreg

1.0.7

Penalised Regression with Multiple Sets of Prior Effects ('Transfer Learning')

0packages depend

2.8Kdownloads / year

32.8%test coverage

13/13checks pass

Overview

About

Maintained by Armin RauschenbergerFirst published 2023-10-018 releasesCRAN page ↗GitHub ↗

Improves the predictive performance of ridge and lasso regression exploiting one or more sources of prior information on the importance and direction of effects (Rauschenberger and others 2023, doi:10.1093/bioinformatics/btad680). For running the vignette (optional), install 'fwelnet' and 'ecpc' from https://github.com/kjytay/fwelnet and https://github.com/Mirrelijn/ecpc, respectively.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("transreg", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rauschenberger/transreg")

Development version from rauschenberger/transreg. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-transreg

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-transreg

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-transreg

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.7 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.06

32.8%

Coverage · measured lines

100%

Documentation · exports

3

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-10
4 OK · 2 NOTE · 0 WARNING · 8 ERROR · 0 FAILURE

Documentation

READMEYes · 251 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 50%

Downloads

2.8K

CRAN downloads in the past year

Rank #10,026 · ~8/day · ~230/mo

Releases R versions

Daily download trend is not available in this view yet.

13630 days

97690 days

2.8K1 year

Compare downloads with other packages →

Also on112 r2u12 autocran

Repository

GitHub ↗ rauschenberger/transreg

0Stars

0Forks

0Open issues

0Open PRs

0Releases

License GPL-3.0 · Last activity 2026-06-02

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 1 family in the upstream repository

Checks run against github.com/rauschenberger/transreg on 2026-08-09.

Continuous integration (2)

GitHub ActionsAppVeyor

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0.0

Imports (3)

glmnet starnet joinet

LinkingTo (0)

none

Suggests (15)

knitr testthat rmarkdown markdown mvtnorm remotes glmtrans xrnet ecpc fwelnet doMC palasso xtable devtools CVXR

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Armin Rauschenberger

Author, Maintainer

Authors (1)

Armin Rauschenberger

Author, Maintainer

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

1.0.7Latest
2026-06-03 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.0.6
2026-04-11 · diff ↗
1.0.5
2025-07-27 · diff ↗
1.0.4
2025-06-10 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.3
2024-09-27 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.2
2023-11-11 · diff ↗
1.0.1
2023-10-31 · diff ↗
1.0.0
2023-10-01
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-10-01
Total releases: 8 / 3 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.0.0
Download size: 75 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("transreg")

Format

Rauschenberger, A. (2026). transreg: Penalised Regression with Multiple Sets of Prior Effects ('Transfer Learning') (Version 1.0.7) [Computer software]. https://doi.org/10.32614/CRAN.package.transreg

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for transreg version 1.0.7 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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