R Observatory: Metrics for joinet version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

joinet

1.0.0

Penalised Multivariate Regression ('Multi-Target Learning')

1packages depend

4.3Kdownloads / year

32.6%test coverage

13/13checks pass

Overview

About

Maintained by Armin RauschenbergerFirst published 2019-08-0310 releasesCRAN page ↗GitHub ↗

Implements penalised multivariate regression (i.e., for multiple outcomes and many features) by stacked generalisation (doi:10.1093/bioinformatics/btab576). For positively correlated outcomes, a single multivariate regression is typically more predictive than multiple univariate regressions. Includes functions for model fitting, extracting coefficients, outcome prediction, and performance measurement. For optional comparisons, install 'remMap' from GitHub (https://github.com/cran/remMap).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("joinet", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rauschenberger/joinet")

Development version from rauschenberger/joinet. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-joinet

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-joinet

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-joinet

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.7 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.08

32.6%

Coverage · measured lines

100%

Documentation · exports

3

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 189 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 33%

Downloads

4.3K

CRAN downloads in the past year

Rank #9,741 · ~12/day · ~356/mo

Releases R versions

Daily download trend is not available in this view yet.

26230 days

98190 days

4.3K1 year

Compare downloads with other packages →

Also on122 r2u18 autocran54 c2d4u

Repository

GitHub ↗ rauschenberger/joinet

4Stars

3Forks

0Open issues

0Open PRs

0Releases

250Commits

4Contributors

License GPL-3.0 · 250 commits · Last activity 2024-09-27

Stars over time

2022-10-17 · 42026-07-07 · 4

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/rauschenberger/joinet on 2026-08-23.

Continuous integration (2)

GitHub ActionsAppVeyor

CRAN release process (1)

cran-comments.md

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0.0

Imports (3)

glmnet palasso cornet

LinkingTo (0)

none

Suggests (15)

knitr rmarkdown testthatMASSmice earth spls MRCE remMap MultivariateRandomForest SiER mcen GPM RMTL MTPS

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

transreg

Code & Tests

People & History

People (1)

Maintainer (1)

Armin Rauschenberger

Author, Maintainer

Authors (1)

Armin Rauschenberger

Author, Maintainer

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.0.0Latest
2024-09-27 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.0.10
2021-08-09 · diff ↗
0.0.9
2021-07-16 · diff ↗
0.0.8
2021-07-16 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.0.7
2021-03-09 · diff ↗
0.0.6
2020-11-23 · diff ↗
unarchivedReturned to CRAN
2020-11-23
archivedRemoved from CRAN
2020-10-18
check problems were not corrected in time
0.0.5
2020-10-03 · diff ↗
R
R 4.0.0 released · 2020-04-24

Show 4 earlier events

0.0.3
2019-11-13 · diff ↗
0.0.2
2019-08-08 · diff ↗
0.0.1
2019-08-03
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2019-08-03
Total releases: 10 / 7 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.0.0
Download size: 64 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Machine Learning & Statistical Learning

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("joinet")

Format

Rauschenberger, A. (2024). joinet: Penalised Multivariate Regression ('Multi-Target Learning') (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.joinet

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for joinet version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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