R Observatory: Metrics for tidyCDISC version 0.2.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

tidyCDISC

0.2.2

Quick Table Generation & Exploratory Analyses on ADaM-Ish Datasets

0packages depend

4.5Kdownloads / year

16.8%test coverage

13/13checks pass

Overview

About

Maintained by Aaron ClarkFirst published 2022-08-304 releasesCRAN page ↗GitHub ↗

Provides users a quick exploratory dive into common visualizations without writing a single line of code given the users data follows the Analysis Data Model (ADaM) standards put forth by the Clinical Data Interchange Standards Consortium (CDISC) https://www.cdisc.org. Prominent modules/ features of the application are the Table Generator, Population Explorer, and the Individual Explorer. The Table Generator allows users to drag and drop variables and desired statistics (frequencies, means, ANOVA, t-test, and other summary statistics) into bins that automagically create stunning tables with validated information. The Population Explorer offers various plots to visualize general trends in the population from various vantage points. Plot modules currently include scatter plot, spaghetti plot, box plot, histogram, means plot, and bar plot. Each plot type allows the user to plot uploaded variables against one another, and dissect the population by filtering out certain subjects. Last, the Individual Explorer establishes a cohesive patient narrative, allowing the user to interact with patient metrics (params) by visit or plotting important patient events on a timeline. All modules allow for concise filtering & downloading bulk outputs into html or pdf formats to save for later.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("tidyCDISC", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Biogen-Inc/tidyCDISC")

Development version from Biogen-Inc/tidyCDISC. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tidycdisc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-tidyCDISC

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-tidyCDISC

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.3 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.10

16.8%

Coverage · measured lines

100%

Documentation · exports

37

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-06-07
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 3 earlier snapshots

OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 760 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 4%

Downloads

4.5K

CRAN downloads in the past year

Rank #8,834 · ~12/day · ~372/mo

Releases R versions

Daily download trend is not available in this view yet.

28830 days

1K90 days

4.5K1 year

Compare downloads with other packages →

Also on184 r2u16 autocran632 conda_forge

Repository

GitHub ↗ biogen-inc/tidycdisc

124Stars

48Forks

56Open issues

3Open PRs

6Releases

2,813Commits

16Contributors

rrstatspharmarinpharma

License AGPL-3.0 · 2,813 commits · Last activity 2026-02-05 · 0% stars, 30d

Stars over time

2025-07-07 · 1112026-07-14 · 124

Repository practices

Upstream repositoryBeta

8 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/biogen-inc/tidycdisc on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (2)

renvdata-raw/

CRAN release process (3)

cran-comments.mdrevdep/CRAN-SUBMISSION

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

41 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

LinkingTo (0)

none

Suggests (5)

devtools knitr shinyalert spelling testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (9)

Maintainer (1)

Aaron Clark

Author, Maintainer

Authors (5)

Aaron Clark

Author, Maintainer

Maya Gans

Author

Ryan Harrison

Author · added in 0.2.2

Jeff Thompson

Author

Teresa Wilson

Author · added in 0.2.0

Contributors (2)

Marly Gotti

Contributor

Robert Krajcik

Contributor

Copyright holders (1)

Biogen Inc

Copyright holder

Other (1)

Nate Mockler

ccp, led

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.2.2Latest
2026-02-05 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.2.1
2023-03-16 · diff ↗
0.2.0
2023-02-03 · diff ↗
0.1.0
2022-08-30
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-08-30
Total releases: 4 / 4 yrs
License: AGPL (>= 3) OSI
Minimum R: ≥ 4.1
Bundled data: 578 KB / 7 files
Download size: 2.3 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("tidyCDISC")

Format

Clark, A., Gans, M., Gotti, M., Harrison, R., Inc, B., Krajcik, R., Mockler, N., Thompson, J., & Wilson, T. (2026). tidyCDISC: Quick Table Generation & Exploratory Analyses on ADaM-Ish Datasets (Version 0.2.2) [Computer software]. https://doi.org/10.32614/CRAN.package.tidyCDISC

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for tidyCDISC version 0.2.2 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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