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statgenGWAS

Genome Wide Association Studies

v1.0.13 · Feb 19, 2026 · GPL-3

Description

Fast single trait Genome Wide Association Studies (GWAS) following the method described in Kang et al. (2010), <doi:10.1038/ng.548>. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.

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CRAN Check Status

3 NOTE
11 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (5 non-OK)
NOTE r-oldrel-macos-arm64

Rd cross-references

Package unavailable to check Rd xrefs: ‘snpStats’
NOTE r-oldrel-macos-arm64

installed package size

installed size is  8.8Mb
  sub-directories of 1Mb or more:
    data   2.8Mb
    libs   5.0Mb
NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘snpStats’
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  9.8Mb
  sub-directories of 1Mb or more:
    data   3.6Mb
    libs   5.2Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   2.8Mb
    libs   1.3Mb

Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘snpStats’
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  9.8Mb
  sub-directories of 1Mb or more:
    data   3.6Mb
    libs   5.2Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   2.8Mb
    libs   1.3Mb

Reverse Dependencies (3)

depends

Dependency Network

Dependencies Reverse dependencies data.table ggplot2 LMMsolver rlang Rcpp sommer statgenMPP statgenIBD statgenQTLxT statgenGWAS

Version History

new 1.0.13 Mar 10, 2026
updated 1.0.13 ← 1.0.12 diff Feb 18, 2026
updated 1.0.12 ← 1.0.11 diff Jun 30, 2025
updated 1.0.11 ← 1.0.10 diff Mar 30, 2025
updated 1.0.10 ← 1.0.9 diff Nov 14, 2024
updated 1.0.9 ← 1.0.8 diff Oct 12, 2022
updated 1.0.8 ← 1.0.7 diff Feb 15, 2022
updated 1.0.7 ← 1.0.6 diff Jul 28, 2021
updated 1.0.6 ← 1.0.5 diff Jul 25, 2021
updated 1.0.5 ← 1.0.4 diff Sep 28, 2020
updated 1.0.4 ← 1.0.3 diff Mar 1, 2020
updated 1.0.3 ← 1.0.2 diff Jan 26, 2020
updated 1.0.2 ← 1.0.1 diff Jan 19, 2020
new 1.0.1 Jan 18, 2020