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statgenIBD

Calculation of IBD Probabilities

v1.0.10 · Mar 2, 2026 · GPL

Description

For biparental, three and four-way crosses Identity by Descent (IBD) probabilities can be calculated using Hidden Markov Models and inheritance vectors following Lander and Green (<https://www.jstor.org/stable/29713>) and Huang (<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.

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CRAN Check Status

4 NOTE
10 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (4 non-OK)
NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: ‘statgenGWAS’
  All declared Imports should be used.
NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: ‘statgenGWAS’
  All declared Imports should be used.
NOTE r-oldrel-macos-arm64

installed package size

installed size is  7.4Mb
  sub-directories of 1Mb or more:
    extdata   2.4Mb
    libs      4.1Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  7.5Mb
  sub-directories of 1Mb or more:
    extdata   2.4Mb
    libs      4.2Mb

Check History

NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: ‘statgenGWAS’
  All declared Imports should be used.
NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: ‘statgenGWAS’
  All declared Imports should be used.
NOTE r-oldrel-macos-arm64

installed package size

installed size is  7.4Mb
  sub-directories of 1Mb or more:
    extdata   2.4Mb
    libs      4.1Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  7.5Mb
  sub-directories of 1Mb or more:
    extdata   2.4Mb
    libs      4.2Mb

Reverse Dependencies (1)

imports

Dependency Network

Dependencies Reverse dependencies data.table ggplot2 Matrix R.utils rlang Rcpp statgenGWAS stringi statgenMPP statgenIBD

Version History

new 1.0.10 Mar 10, 2026
updated 1.0.10 ← 1.0.9 diff Mar 1, 2026
updated 1.0.9 ← 1.0.8 diff Jun 30, 2025
updated 1.0.8 ← 1.0.7 diff Feb 4, 2025
updated 1.0.7 ← 1.0.6 diff Feb 1, 2024
updated 1.0.6 ← 1.0.5 diff Aug 29, 2023
updated 1.0.5 ← 1.0.4 diff Sep 3, 2022
updated 1.0.4 ← 1.0.3 diff Mar 6, 2022
updated 1.0.3 ← 1.0.2 diff Feb 16, 2022
updated 1.0.2 ← 1.0.1 diff Dec 9, 2021
updated 1.0.1 ← 1.0.0 diff Sep 13, 2021
new 1.0.0 Aug 15, 2021