R Observatory: Metrics for statgenQTLxT version 1.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

statgenQTLxT

1.0.3

Multi-Trait and Multi-Trial Genome Wide Association Studies

0packages depend

2.8Kdownloads / year

85.4%test coverage

13/13checks pass

Overview

About

Maintained by Bart-Jan van RossumFirst published 2023-02-234 releasesCRAN page ↗

Fast multi-trait and multi-trail Genome Wide Association Studies (GWAS) following the method described in Zhou and Stephens. (2014), doi:10.1038/nmeth.2848. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("statgenQTLxT", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-statgenqtlxt

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-statgenQTLxT

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-statgenQTLxT

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 6.8 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.00

85.4%

Coverage · measured lines

100%

Documentation · exports

5

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 3 earlier snapshots

NOTE2026-04-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-09
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 125 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 42%

Downloads

2.8K

CRAN downloads in the past year

Rank #16,627 · ~8/day · ~233/mo

Releases R versions

Daily download trend is not available in this view yet.

14830 days

63990 days

2.8K1 year

Compare downloads with other packages →

Also on442 r2u19 autocran

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (5)

data.table foreach Rcpp sommer statgenGWAS (>= 1.0.9)

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (4)

covr knitr rmarkdown tinytest

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (10)

Maintainer (1)

Bart-Jan van Rossum

Author, Maintainer

Authors (2)

Bart-Jan van Rossum

Author, Maintainer

Willem Kruijer

Author

Contributors (8)

Martin P Boer

Contributor · added in 1.0.3

Contributor

Contributor

Contributor

Contributor

Contributor

Contributor

Contributor

Listed in earlier versions (1)

Martin Boer

no longer listed · 1.0.0 to 1.0.2

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.3Latest
2025-07-23 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.2
2024-01-23 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.1
2023-04-04 · diff ↗
1.0.0
2023-02-23
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2023-02-23
Total releases: 4 / 3 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.0
Bundled data: 257 KB / 1 file
Download size: 582 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("statgenQTLxT")

Format

van Rossum, B., Boer, M. P., Bustos-Korts, D., Kruijer, W., Millet, E. J., Paulo, J., Verouden, M., Wehrens, R., Zheng, C., & van Eeuwijk, F. (2025). statgenQTLxT: Multi-Trait and Multi-Trial Genome Wide Association Studies (Version 1.0.3) [Computer software]. https://doi.org/10.32614/CRAN.package.statgenQTLxT

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for statgenQTLxT version 1.0.3 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →