simulist
Simulate Disease Outbreak Line List and Contacts Data
v0.7.0
·
Feb 6, 2026
·
MIT + file LICENSE
Description
Tools to simulate realistic raw case data for an epidemic in the form of line lists and contacts using a branching process. Simulated outbreaks are parameterised with epidemiological parameters and can have age-structured populations, age-stratified hospitalisation and death risk and time-varying case fatality risk.
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CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 8, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 7, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
examples
Running examples in ‘simulist-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sim_contacts
> ### Title: Simulate contacts for an infectious disease outbreak
> ### Aliases: sim_con
...[truncated]...
'/tmp/RtmppvFX4x/Rf10c08db3771dc': No space left on device
Error: package or namespace load failed for ‘epiparameter’:
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
Execution halted
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 7.9Mb
sub-directories of 1Mb or more:
doc 7.0Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 7.9Mb
sub-directories of 1Mb or more:
doc 7.0Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 7.9Mb
sub-directories of 1Mb or more:
doc 7.0Mb