R Observatory: Metrics for seqimpute version 2.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

seqimpute

2.2.1

Imputation of Missing Data in Sequence Analysis

0packages depend

3Kdownloads / year

97.8%test coverage

13/13checks pass

Overview

About

Maintained by Kevin EmeryFirst published 2022-09-086 releasesCRAN page ↗GitHub ↗

Multiple imputation of missing data in a dataset using MICT or MICT-timing methods. The core idea of the algorithms is to fill gaps of missing data, which is the typical form of missing data in a longitudinal setting, recursively from their edges. Prediction is based on either a multinomial or random forest regression model. Covariates and time-dependent covariates can be included in the model.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("seqimpute", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("emerykevin/seqimpute")

Development version from emerykevin/seqimpute. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-seqimpute

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-seqimpute

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-seqimpute

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.0 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.66

97.8%

Coverage · measured lines

100%

Documentation · exports

21

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 90%
Documented parameters: 100%
Return-value docs: 82%
References docs: 7%

Downloads

3K

CRAN downloads in the past year

Rank #14,645 · ~8/day · ~246/mo

Releases R versions

Daily download trend is not available in this view yet.

19230 days

70790 days

3K1 year

Compare downloads with other packages →

Also on115 r2u

Repository

GitHub ↗ emerykevin/seqimpute

1Stars

0Forks

0Open issues

0Open PRs

0Releases

24Commits

1Contributors

24 commits · Last activity 2026-01-21 · 0% stars, 30d

Stars over time

2026-02-04 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/emerykevin/seqimpute on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdrevdep/

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (21)

Ameliaclusterdfidx doRNG doSNOW dplyr foreachgraphicsmlrnnetparallelplyr ranger rmsstatsstringr TraMineR TraMineRextrasutilsmice parallelly

LinkingTo (0)

none

Suggests (3)

R.rsp rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Kevin Emery

Author, Maintainer

Authors (4)

Author, Maintainer

Author

Author

Author

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.2.1Latest
2026-01-20 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
2.2.0
2025-01-15 · diff ↗
2.1.0
2024-11-13 · diff ↗
R
R 4.4.0 released · 2024-04-24
2.0.0
2024-03-27 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.8
2022-11-07 · diff ↗
1.7
2022-09-08
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-09-08
Total releases: 6 / 4 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5.0
Bundled data: 3.3 KB / 1 file
Download size: 906 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("seqimpute")

Format

Emery, K., Berchtold, A., Guinchard, A., & Taher, K. (2026). seqimpute: Imputation of Missing Data in Sequence Analysis (Version 2.2.1) [Computer software]. https://doi.org/10.32614/CRAN.package.seqimpute

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for seqimpute version 2.2.1 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →