R Observatory: Metrics for scBio version 0.1.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

scBio

0.1.6

Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data

0packages depend

2.8Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Amit FrishbergFirst published 2018-08-077 releasesCRAN page ↗GitHub ↗

Cellular population mapping (CPM) a deconvolution algorithm in which single-cell genomics is required in only one or a few samples, where in other samples of the same tissue, only bulk genomics is measured and the underlying fine resolution cellular heterogeneity is inferred.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("scBio", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("amitfrish/scBio")

Development version from amitfrish/scBio. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-scbio

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

8

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 20%

Downloads

2.8K

CRAN downloads in the past year

Rank #12,431 · ~8/day · ~231/mo

Releases R versions

Daily download trend is not available in this view yet.

24030 days

80290 days

2.8K1 year

Compare downloads with other packages →

Also on109 r2u322 bioconda31 c2d4u

Repository

GitHub ↗ amitfrish/scbio

21Stars

7Forks

2Open issues

0Open PRs

1Releases

28Commits

1Contributors

28 commits · Last activity 2021-07-13 · 0% stars, 30d

Stars over time

2024-01-05 · 202026-07-07 · 21

Repository practices

Upstream repositoryBeta

Checks run against github.com/amitfrish/scbio on 2026-08-16.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (8)

sp foreachparalleldoSNOW raster fields LiblineaR limma

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (3)

Amit Frishberg

no longer listed · 0.1.0 to 0.1.6

Irit Gat-Viks

no longer listed · 0.1.0 to 0.1.6

Naama Peshes-Yaloz

no longer listed · 0.1.0 to 0.1.6

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.1.6Latest
2020-05-20 · current release · diff ↗
R
R 4.0.0 released · 2020-04-24
0.1.5
2019-05-21 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.1.4
2019-03-29 · diff ↗
0.1.3
2019-03-24 · diff ↗
0.1.2
2018-10-21 · diff ↗
0.1.1
2018-10-14 · diff ↗
0.1.0
2018-08-07
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-08-07
Total releases: 7 / 8 yrs
License: GPL-2 OSI
Minimum R: ≥ 2.10
Bundled data: 812 KB / 4 files
Download size: 823 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("scBio")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for scBio version 0.1.6 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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