R Observatory: Metrics for sRNAGenetic version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

sRNAGenetic needs lambda.r (through futile.logger), which is past its CRAN deadline of Oct 12 to fix its check problems.

sRNAGenetic

0.1.0Package record

Analysis of Small RNA Expression Changes in Hybrid Plants

0packages depend

2.5Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Yu qing WuCRAN page ↗

The most important function of the R package is the genetic effects analysis of small RNA in hybrid plants via two methods, and at the same time, it provides various forms of graph related to data characteristics and expression analysis. In terms of two classification methods, one is the calculation of the additive (a) and dominant (d), the other is the evaluation of expression level dominance by comparing the total expression of the small RNA in progeny with the expression level in the parent species.

Install

R (CRAN)Ubuntu (r2u)

install.packages("sRNAGenetic", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-srnagenetic

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.2 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-10

Show 2 earlier changesHide 2 earlier changes

ERROR12 OK, 1 ERROR2026-05-03
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMEYes · 316 wordsVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 22 (1 internal)includes a package overview page
Examples that run: 100%18 run in a plain check
Exported functions with examples: 75%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 41%

How these are measured

Downloads

2.5K

CRAN downloads in the past year

Rank #18,972 · ~7/day · ~207/mo

Releases R versions

Daily download trend is not available in this view yet.

24230 days

68390 days

2.5K1 year

Compare downloads with other packages →

Also on66 r2u

How downloads are counted

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing sRNAGenetic adds 25 packages (9 with compiled code, 18 MB of source tarballs). Heaviest: ggplot2 6.0 MB, ggsci 2.1 MB, Rcpp 1.8 MB. 1 more not on CRAN is not measured.

Depends (1)

R >= 2.10

Imports (6)

DESeq2 futile.logger ggplot2 ggsci plyr VennDiagram

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependencies facing archival

CRAN will archive these unless their check problems are fixed by the date shown. This package needs each one to install.

lambda.r through futile.loggerdeadline passed Oct 12

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Yu qing Wu

Author, Maintainer since 0.1.0 (2022)

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.1.0Latest
record
2022-03-21 · current release
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-03-21
Total releases: 1 / 4 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 19 KB / 9 files
Download size: 35 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("sRNAGenetic")

Format

Wu, Y. q. (2022). sRNAGenetic: Analysis of Small RNA Expression Changes in Hybrid Plants (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.sRNAGenetic

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for sRNAGenetic version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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