R Observatory: Metrics for sRNAGenetic version 0.1.0

Balamuta, James Joseph

sRNAGenetic

0.1.0

Analysis of Small RNA Expression Changes in Hybrid Plants

0packages depend

2.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Yu qing WuFirst published 2022-03-211 releasesCRAN page ↗

The most important function of the R package is the genetic effects analysis of small RNA in hybrid plants via two methods, and at the same time, it provides various forms of graph related to data characteristics and expression analysis. In terms of two classification methods, one is the calculation of the additive (a) and dominant (d), the other is the evaluation of expression level dominance by comparing the total expression of the small RNA in progeny with the expression level in the parent species.

Install

R (CRAN)Ubuntu (r2u)

install.packages("sRNAGenetic", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-srnagenetic

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

6

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-05-03
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 316 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 41%

Downloads

2.3K

CRAN downloads in the past year

Rank #17,871 · ~6/day · ~193/mo

Releases R versions

Daily download trend is not available in this view yet.

13930 days

59790 days

2.3K1 year

Compare downloads with other packages →

Also on96 r2u

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (6)

DESeq2 futile.logger ggplot2 ggsci plyr VennDiagram

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Yu qing Wu

Author, Maintainer

Authors (1)

Yu qing Wu

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2022-03-21
Total releases: 1 / 4 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 19 KB / 9 files
Download size: 35 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Start here. This is the citation for the package itself.

citation("sRNAGenetic")

CRAN DOI

https://doi.org/10.32614/CRAN.package.sRNAGenetic

BibTeX, derived from DESCRIPTION

@Manual{sRNAGenetic,
  title  = {sRNAGenetic: Analysis of Small RNA Expression Changes in Hybrid Plants},
  author = {Wu, Yu qing},
  year   = {2022},
  note   = {R package version 0.1.0},
  doi    = {10.32614/CRAN.package.sRNAGenetic},
  url    = {https://CRAN.R-project.org/package=sRNAGenetic}
}

Derived from the package DESCRIPTION, not from a citation file the authors wrote. If they publish one later, prefer it.

This is the citation for the package. It is not a citation for the R Observatory.

Cite this page

Use this when the claim is about a measurement on this page.

BibTeX

@misc{robservatorysRNAGenetic,
  author    = {Balamuta, James Joseph},
  title     = {{R} {Observatory}: Metrics for {sRNAGenetic} version 0.1.0},
  year      = {2026},
  publisher = {HJJB, LLC},
  url       = {https://r-observatory.thecoatlessprofessor.com/packages/sRNAGenetic},
  note      = {Data set. Data release v2026-08-05}
}

APA

Balamuta, J. J. (2026). R Observatory: Metrics for sRNAGenetic version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-05. https://r-observatory.thecoatlessprofessor.com/packages/sRNAGenetic

RIS

TY  - DATA
AU  - Balamuta, James Joseph
TI  - R Observatory: Metrics for sRNAGenetic version 0.1.0
PY  - 2026
PB  - HJJB, LLC
N1  - Data release v2026-08-05
UR  - https://r-observatory.thecoatlessprofessor.com/packages/sRNAGenetic
ER  -

In prose

These package metrics were obtained from the R Observatory (Balamuta, 2026), data release v2026-08-05, https://r-observatory.thecoatlessprofessor.com/packages/sRNAGenetic.

Bound to data release v2026-08-05, which is what makes the numbers on this page reproducible. See how to cite.

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