Description
Supports modelling real-time case data to facilitate the real-time surveillance of infectious diseases and other point phenomena. The package provides automated computational grid generation over an area of interest with methods to map covariates between geographies, model fitting including spatially aggregated case counts, and predictions and visualisation. Both Bayesian and maximum likelihood methods are provided. Log-Gaussian Cox Processes are described by Diggle et al. (2013) <doi:10.1214/13-STS441> and we provide both the low-rank approximation for Gaussian processes described by Solin and Särkkä (2020) <doi:10.1007/s11222-019-09886-w> and Riutort-Mayol et al (2023) <doi:10.1007/s11222-022-10167-2> and the nearest neighbour Gaussian process described by Datta et al (2016) <doi:10.1080/01621459.2015.1044091>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (6 non-OK)
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
installed package size
installed size is 110.6Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 108.6Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
installed package size
installed size is 113.8Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 111.7Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
installed package size
installed size is 5.9Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 3.8Mb
Check History
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 110.6Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 108.6Mb
installed package size
installed size is 113.8Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 111.7Mb
installed package size
installed size is 5.9Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 3.8Mb