R Observatory: Metrics for glmmrBase version 1.4.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

glmmrBase

1.4.1Package record

Monte Carlo Maximum Likelihood and Analysis of Generalised Linear Mixed Models

3packages depend

6.4Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Sam WatsonCRAN page ↗GitHub ↗Issues ↗

Specification, analysis, simulation, and fitting of generalised linear mixed models. Monte Carlo Maximum likelihood model fitting for a range of models, non-linear fixed effect specifications, a wide range of flexible covariance functions including Gaussian Process approximations. Methods described in Watson, Wang, and Giorgi (2026) doi:10.48550/arXiv.2601.16022.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("glmmrBase", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("samuel-watson/glmmrBase")

Development version from samuel-watson/glmmrBase. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-glmmrbase

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-glmmrBase

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-glmmrBase

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 9.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK7 OK2026-05-29

Show 2 earlier changesHide 2 earlier changes

ERROR10 OK, 2 NOTE, 2 ERROR2026-04-01
NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.4.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 46includes a package overview page
Examples that run: 100%16 run in a plain check
Exported functions with examples: 82%
Documented parameters: 100%
Return-value docs: 82%
Help pages citing references: 2%

How these are measured

Downloads

6.4K

CRAN downloads in the past year

Rank #4,888 · ~18/day · ~534/mo

Releases R versions

Daily download trend is not available in this view yet.

66730 days

1.7K90 days

6.4K1 year

Compare downloads with other packages →

Also on567 r2u6 autocran

How downloads are counted

Repository

samuel-watson/glmmrbase ↗Account: samuel-watson

5Stars

0Forks

5Open issues

0Open PRs

18Releases

526Commits

3Commit identities

526 commits · Last activity 2026-10-21 · 0% stars, 30d · Default branch at 1.4.2, ahead of CRAN 1.4.1 (checked 2026-10-21)

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 15
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-07-20 · 52026-07-07 · 5

How these are measured

PracticesBeta

Checks run against github.com/samuel-watson/glmmrbase on 2026-10-21.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing glmmrBase adds 5 packages (3 with compiled code, 18 MB of source tarballs). Heaviest: BH 14 MB, Rcpp 1.8 MB, RcppEigen 1.7 MB.

Depends (2)

R >= 3.5.0Matrix

Imports (3)

methodsRcpp R6

LinkingTo (4)

Rcpp RcppEigen BH RcppParallel

Suggests (2)

fmesher lme4

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

0indirect

Depends 1 · Imports 2 · LinkingTo 2

Depends, Imports or LinkingTo, most downloaded first

rts2 glmmrOptim marginme

How these are counted

Code & Tests

Datasets

People & History

People (1)

Sam Watson

Author, Maintainer since 0.1.2 (2022)

Listed in earlier versions (1)

Yi Pan

no longer listed · 0.1.2 to 0.2.5

Releases (31)

Pick two releases to compare their code metrics.

unarchivedReturned to CRAN
2026-05-28
1.4.1Latest
record
2026-05-28 · current release · diff ↗
archivedRemoved from CRAN
2026-05-15
issues were not corrected in time
R
R 4.6.0 released · 2026-04-24
1.4.0
record
2026-03-31 · diff ↗ ·
added 1 export
mesh_helper
1.3.0
record
2026-03-31 · diff ↗
1.2.1
record
2026-01-27 · diff ↗
1.2.0
record
2026-01-21 · diff ↗
1.1.0
record
2025-09-29 · diff ↗ ·
added 1 export
hsgp_rescale
1.0.2
record
2025-07-22 · diff ↗
1.0.1
record
2025-07-08 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.0
record
2025-04-01 · diff ↗
0.11.2
record
2024-12-12 · diff ↗
0.11.1
record
2024-12-10 · diff ↗
0.10.5
record
2024-09-08 · diff ↗ ·
added 2 exports
Quantile, hessian_from_formula

Show 22 earlier eventsHide 22 earlier events

0.9.2
record
2024-06-19 · diff ↗ ·
added 3 exports
mcml_lmer, mcml_glmer, lme4_to_glmmr
R
R 4.4.0 released · 2024-04-24
0.8.1
record
2024-04-08 · diff ↗
0.7.1
record
2024-02-26 · diff ↗
0.6.2
record
2024-01-19 · diff ↗
0.6.1
record
2024-01-11 · diff ↗
0.5.3
record
2023-11-24 · diff ↗
0.5.2
record
2023-11-22 · diff ↗
0.4.6
record
2023-09-14 · diff ↗
0.4.5
record
2023-08-15 · diff ↗
0.4.4
record
2023-07-01 · diff ↗
0.4.2
record
2023-06-23 · diff ↗ ·
removed 1 export
pattern:^[[:alpha:]]+

added 10 exports
Beta, Covariance, MeanFunction, Model, cross_df, match_rows, nelder, nest_df, progress_bar, setParallel
R
R 4.3.0 released · 2023-04-21
0.3.1
record
2023-04-20 · diff ↗
0.2.5
record
2023-02-24 · diff ↗
0.2.4
record
2023-02-09 · diff ↗
0.2.3
record
2022-12-08 · diff ↗
0.2.2
record
2022-12-03 · diff ↗
0.2.1
record
2022-11-30 · diff ↗
0.1.3
record
2022-11-03 · diff ↗
0.1.2
record
2022-09-22
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-09-22
Total releases: 31 / 4 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 20 KB / 3 files
Download size: 241 KB

Appears in task views

Mixed, Multilevel, and Hierarchical Models in R

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("glmmrBase")

Format

Watson, S. (2026). glmmrBase: Monte Carlo Maximum Likelihood and Analysis of Generalised Linear Mixed Models (Version 1.4.1) [Computer software]. https://doi.org/10.32614/CRAN.package.glmmrBase

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for glmmrBase version 1.4.1 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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