R Observatory: Metrics for raymolecule version 0.9.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

raymolecule

0.9.0Package record

Parse and Render Molecular Structures in 3D

0packages depend

2.9Kdownloads / year

83.2%test coverage

13/13flavors OK

Overview

About

Maintained by Tyler Morgan-WallCRAN page ↗GitHub ↗Website ↗Issues ↗

Downloads and parses 'SDF' (Structural Description Format) and 'PDB' (Protein Database) files for 3D rendering.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("raymolecule", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("tylermorganwall/raymolecule")

Development version from tylermorganwall/raymolecule. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-raymolecule

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-raymolecule

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-raymolecule

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-07-03
NOTE13 NOTE2026-06-09
ERROR12 NOTE, 1 ERROR2026-06-08

Show 1 earlier changeHide 1 earlier change

NOTE3 OK, 11 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.9.0

README· In the repository, left out of the releaseVignettesNoNEWSNoCitation fileNoWebsiteYes · pkgdown

Help pages: 14 (4 internal)
Examples that run: 91%10 run in a plain check (8 of them under a condition) · 1 hold no code
Exported functions with examples: 100%
Documented parameters: 94%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

2.9K

CRAN downloads in the past year

Rank #11,502 · ~8/day · ~241/mo

Releases R versions

Daily download trend is not available in this view yet.

31030 days

94290 days

2.9K1 year

Compare downloads with other packages →

Also on80 r2u2 autocran

How downloads are counted

Repository

tylermorganwall/raymolecule ↗Account: tylermorganwall

42Stars

6Forks

0Open issues

0Open PRs

0Releases

43Commits

2Commit identities

43 commits · Last activity 2026-06-25 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 5
Median days to close, 50 most recently updated closed PRs: 1

Stars over time

2024-06-03 · 392026-08-30 · 42

How these are measured

PracticesBeta

7 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/tylermorganwall/raymolecule on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-06-25 · The repository has a site deploy workflow

pkgdown site last built 2026-06-25, before release 0.9.0 (2026-06-26)

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing raymolecule adds 66 packages (43 with compiled code, 43 MB of source tarballs). Heaviest: stringi 11 MB, sp 4.3 MB, spacefillr 3.1 MB.

Depends (1)

R >= 4.1

Imports (4)

rayrender PeriodicTable httr rayvertex (>= 0.15.0)

LinkingTo (0)

none

Suggests (2)

testthat rayimage

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Tyler Morgan-Wall

Releases (3)

Pick two releases to compare their code metrics.

0.9.0Latest
record
2026-06-26 · current release · diff ↗ ·
removed 2 exports
%>%, run_documentation

added 2 exports
download_pdb, generate_ribbon_scene
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.5.3
record
2024-02-22 · diff ↗ ·
added 1 export
run_documentation
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.5.0
record
2022-03-21
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-03-21
Total releases: 3 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1
Download size: 150 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("raymolecule")

Format

Morgan-Wall, T. (2026). raymolecule: Parse and Render Molecular Structures in 3D (Version 0.9.0) [Computer software]. https://doi.org/10.32614/CRAN.package.raymolecule

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for raymolecule version 0.9.0 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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