R Observatory: Metrics for rase version 0.3-3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2020-12-13. Its history is shown below.

Reason: mail to the maintainer bounced

Details below reflect version 0.3-3, its last release before removal.

rase

0.3-3Package record

Range Ancestral State Estimation for Phylogeography and Comparative Analyses

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Ignacio QuinteroCRAN page ↗

Implements the Range Ancestral State Estimation for phylogeography described in Quintero, I., Keil, P., Jetz, W., & Crawford, F. W. (2015) DOI:10.1093/sysbio/syv057. It also includes Bayesian inference of ancestral states under a Brownian Motion model of character evolution and Maximum Likelihood estimation of rase for n-dimensional data. Visualizing functions in 3D are implemented using the rgl package.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/rase/rase_0.3-3.tar.gz"
pkgFile <- "rase_0.3-3.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.3-3) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.3-3

READMEYes · 88 wordsVignettesNoNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 25 (11 internal)includes a package overview page
Examples that run: 92%12 run in a plain check · 1 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 75%
Help pages citing references: 84%

How these are measured

Downloads

rase Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

How downloads are counted

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (4)

R >= 2.14.0ape polyCub spatstat

Imports (6)

mvtnorm rgl smmethodsgrDevicesstats

LinkingTo (0)

none

Suggests (3)

sp coda rpanel

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Ignacio Quintero

Author, Maintainer since 0.2-2 (2015)

Forrest W. Crawford

Author

Petr Keil

Author

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2020-12-13
mail to the maintainer bounced
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.3-3
record
2017-09-22 · diff ↗
R
R 3.4.0 released · 2017-04-21
0.3-2
record
2017-03-22 · diff ↗ ·
removed 1 export
post.mcmc
R
R 3.3.0 released · 2016-05-03
0.2-22
record
2016-01-13 · diff ↗ ·
removed 1 export
random_rase3d
0.2-21
record
2015-11-09 · diff ↗
0.2-2
record
2015-08-13
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-08-13
Total releases: 5 / 11 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.14.0
Bundled data: 123 KB / 1 file

Cite

Cite this package

Run in R for the authors' entry:

citation("rase")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/sysbio/syv057.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for rase version 0.3-3 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →