rPanglaoDB

0.2.1

Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB Database

0packages depend

2.9Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Daniel OsorioFirst published 2021-04-153 releasesCRAN page ↗GitHub ↗

Download and merge labeled single-cell RNA-seq data from the PanglaoDB https://panglaodb.se/ into a Seurat object.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("rPanglaoDB", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("dosorio/rPanglaoDB")

Development version from dosorio/rPanglaoDB. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rpanglaodb

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-rPanglaoDB

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-rPanglaoDB

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1ERROR12OK

Failing flavors

ERROR r-oldrel-macos-arm64

Slowest check: 7.5 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

ERROR2026-03-10
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Documentation

READMEYes · 704 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.9K

CRAN downloads in the past year

Rank #14,199 · ~8/day · ~246/mo

Releases R versions

Daily download trend is not available in this view yet.

20730 days

74890 days

2.9K1 year

Compare downloads with other packages →

Also on102 r2u4 autocran29 c2d4u

Repository

GitHub ↗ dosorio/rpanglaodb

27Stars

1Forks

3Open issues

0Open PRs

0Releases

140Commits

3Contributors

data-miningdata-integrationsingle-cellrna-seqsingle-cell-rna-seq

140 commits · Last activity 2023-06-01 · 0% stars, 30d

Stars over time

2025-05-28 · 262026-07-07 · 27

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/dosorio/rpanglaodb on 2026-07-26.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (6)

methodsXML xml2 Seurat pbapplyMatrix

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Daniel Osorio

Author, Maintainer

Authors (3)

Daniel Osorio

Author, Maintainer

James J. Cai

Author

Marieke Kuijjer

Author

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.2.1Latest
2021-05-13 · current release · diff ↗
0.2.0
2021-04-23 · diff ↗
0.1.0
2021-04-15
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-04-15
Total releases: 3 / 5 yrs
License: GPL-3 OSI
Download size: 9.8 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

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