R Observatory: Metrics for qtlpoly version 0.2.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2025-12-08. Its history is shown below.

Reason: requires archived package 'mappoly' and email to the maintainer is undeliverable

Details below reflect version 0.2.4, its last release before removal.

qtlpoly

0.2.4Package record

Random-Effect Multiple QTL Mapping in Autopolyploids

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Gabriel de Siqueira GesteiraCRAN page ↗Website ↗

Performs random-effect multiple interval mapping (REMIM) in full-sib families of autopolyploid species based on restricted maximum likelihood (REML) estimation and score statistics, as described in Pereira et al. (2020) doi:10.1534/genetics.120.303080.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/qtlpoly/qtlpoly_0.2.4.tar.gz"
pkgFile <- "qtlpoly_0.2.4.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.2.4) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.4

READMEYes · 643 wordsVignettesNoNEWSNoCitation fileYes · cites a publicationWebsiteYes

Help pages: 27 (1 internal)
Examples that run: 27%7 run in a plain check · 19 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 100%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on320 r2u5 autocran72 c2d4u

How downloads are counted

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (17)

ggplot2 abindMASSgtools (>= 3.9.2)CompQuadFormMatrixRLRsim mvtnormnlmequadprogparalleldoParallel foreachstatsmethodsmappoly Rcpp

LinkingTo (3)

Rcpp RcppArmadillo RcppProgress

Suggests (3)

rmarkdown devtools knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (6)

Gabriel de Siqueira Gesteira

Contributor, Maintainer since 0.2.2 (2021)

Guilherme da Silva Pereira

Author · added in 0.2.3

Marcelo Mollinari

Contributor

Zhao-Bang Zeng

Contributor

Long Qu

Contributor

Giovanny Covarrubias-Pazaran

Contributor

Listed in earlier versions (1)

Guilhereme da Silva Pereira

no longer listed · 0.2.2

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-12-08
requires archived package 'mappoly' and email to the maintainer is undeliverable
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
unarchivedReturned to CRAN
2024-03-25
0.2.4
record
2024-03-25 · diff ↗ ·
added 4 exports
fit_model2, null_model2, read_data2, remim2
archivedRemoved from CRAN
2024-03-19
issues were not corrected in time
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.2.3
record
2022-01-12 · diff ↗
0.2.2
record
2021-11-10
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-11-10
Total releases: 3 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.0
Bundled data: 387 KB / 7 files

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("qtlpoly")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for qtlpoly version 0.2.4 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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