bnpsd
Simulate Genotypes from the BN-PSD Admixture Model
Description
The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions. The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters. The BN-PSD model can be used to yield complex population structures. This simulation approach is now extended to subpopulations related by a tree. Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
Check History
NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 24, 2026
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
ERROR 11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 23, 2026
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.