R Observatory: Metrics for plasma version 1.1.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

plasma

1.1.5

Partial LeAst Squares for Multiomic Analysis

0packages depend

6.6Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Kevin R. CoombesFirst published 2022-12-065 releasesCRAN page ↗

Contains tools for supervised analyses of incomplete, overlapping multiomics datasets. Applies partial least squares in multiple steps to find models that predict survival outcomes. See Yamaguchi et al. (2023) doi:10.1101/2023.03.10.532096.

Install

R (CRAN)Ubuntu (r2u)

install.packages("plasma", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-plasma

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

1ERROR12OK

Failing flavors

ERROR r-release-linux-x86_64

Slowest check: 6.2 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.19

not tracked

Coverage

100%

Documentation · exports

10

Dependencies · direct

Check history

ERROR2026-08-16
11 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE
OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-19
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-18
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 3 earlier snapshots

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 88%
References docs: 10%

Downloads

6.6K

CRAN downloads in the past year

Rank #5,730 · ~18/day · ~552/mo

Releases R versions

Daily download trend is not available in this view yet.

26130 days

1.4K90 days

6.6K1 year

Compare downloads with other packages →

Also on114 r2u

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (10)

methodsstatsgraphicssurvivalpls plsRcox Polychrome viridisLite beanplot oompaBase

LinkingTo (0)

none

Suggests (3)

R.rsp tidyr ClassDiscovery

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Kevin R. Coombes

Maintainer, Author

Authors (3)

Kevin R. Coombes

Maintainer, Author

Salma Abdelbaky

Author

Kyoko Yamaguchi

Author

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.1.5Latest
2025-05-27 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.1.4
2025-04-07 · diff ↗
1.1.3
2024-04-28 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.0.0
2023-03-13 · diff ↗
0.9.21
2022-12-06
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-12-06
Total releases: 5 / 4 yrs
License: Apache License (== 2.0)
Minimum R: ≥ 3.5.0
Bundled data: 1.8 KB / 2 files
Download size: 1.8 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("plasma")

Format

Coombes, K. R., Abdelbaky, S., & Yamaguchi, K. (2025). plasma: Partial LeAst Squares for Multiomic Analysis (Version 1.1.5) [Computer software]. https://doi.org/10.32614/CRAN.package.plasma

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for plasma version 1.1.5 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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