Description
Applies phylogenetic comparative methods (PCM) and phylogenetic trait imputation using structural equation models (SEM), extending methods from Thorson et al. (2023) <doi:10.1111/2041-210X.14076>. This implementation includes a minimal set of features, to allow users to easily read all of the documentation and source code. PCM using SEM includes phylogenetic linear models and structural equation models as nested submodels, but also allows imputation of missing values. Features and comparison with other packages are described in Thorson and van der Bijl (2023) <doi:10.1111/jeb.14234>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | OK |
Check details (5 non-OK)
re-building of vignette outputs
Note: skipping ‘fisheries.Rmd’ due to unavailable dependencies: 'phylosignal'
installed package size
installed size is 62.9Mb
sub-directories of 1Mb or more:
libs 62.1Mb
installed package size
installed size is 63.8Mb
sub-directories of 1Mb or more:
libs 63.1Mb
package dependencies
Package suggested but not available for checking: 'semPlot'
re-building of vignette outputs
Note: skipping ‘fisheries.Rmd’ due to unavailable dependencies: 'phylosignal'
Check History
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
re-building of vignette outputs
Note: skipping ‘fisheries.Rmd’ due to unavailable dependencies: 'phylosignal'
installed package size
installed size is 62.9Mb
sub-directories of 1Mb or more:
libs 62.1Mb
installed package size
installed size is 63.8Mb
sub-directories of 1Mb or more:
libs 63.1Mb
package dependencies
Package suggested but not available for checking: 'semPlot'