R Observatory: Metrics for permutes version 2.8

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

permutes

2.8

Permutation Tests for Time Series Data

1packages depend

10.5Kdownloads / year

–test coverage

8/13checks pass

Overview

About

Maintained by Cesko C. VoetenFirst published 2018-05-1814 releasesCRAN page ↗GitLab ↗

Helps you determine the analysis window to use when analyzing densely-sampled time-series data, such as EEG data, using permutation testing (Maris & Oostenveld, 2007) doi:10.1016/j.jneumeth.2007.03.024. These permutation tests can help identify the timepoints where significance of an effect begins and ends, and the results can be plotted in various types of heatmap for reporting. Mixed-effects models are supported using an implementation of the approach by Lee & Braun (2012) doi:10.1111/j.1541-0420.2011.01675.x.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("permutes", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("cvoeten/permutes")

Development version from cvoeten/permutes. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-permutes

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-permutes

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-permutes

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

5NOTE8OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64

Slowest check: 4.3 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

3

Dependencies · direct

Check history

NOTE2026-07-16
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-30
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 1 earlier snapshots

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 82%
Documented parameters: 76%
Return-value docs: 64%
References docs: 0%

Downloads

10.5K

CRAN downloads in the past year

Rank #4,557 · ~29/day · ~875/mo

Releases R versions

Daily download trend is not available in this view yet.

30330 days

1.7K90 days

10.5K1 year

Compare downloads with other packages →

Also on156 r2u35 autocran

Repository

GitLab ↗ cvoeten/permutes

Repository practices

Upstream repositoryBeta

Repository gitlab.com/cvoeten/permutes is linked, but repository-practices checks have not run for it yet. Checks are GitHub-only for now.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (3)

plyrstatsutils

LinkingTo (0)

none

Suggests (11)

buildmer car doParallel ggplot2 glmmTMB knitr lme4 lmPerm permuco rmarkdown viridis

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

setweaver

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Cesko C. Voeten

Author, Maintainer

Authors (1)

Cesko C. Voeten

Author, Maintainer

Listed in earlier versions (2)

Cesko Voeten

no longer listed · 0.1

Cesko C.

no longer listed · 0.1.1 to 2.8

Package Timeline

14 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.8Latest
2023-09-28 · current release · diff ↗
2.7
2023-09-12 · diff ↗
R
R 4.3.0 released · 2023-04-21
2.6
2022-07-13 · diff ↗
2.5
2022-06-15 · diff ↗
2.4
2022-05-20 · diff ↗
R
R 4.2.0 released · 2022-04-22
2.3.2
2021-12-16 · diff ↗
2.2
2021-10-13 · diff ↗
2.1.1
2021-09-14 · diff ↗
2.1
2021-09-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
2.0.1
2021-02-24 · diff ↗

Show 7 earlier events

2.0
2021-02-22 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.0
2019-07-21 · diff ↗
0.1.1
2019-05-18 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.1
2018-05-18
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-05-18
Total releases: 14 / 8 yrs
License: FreeBSD
Minimum R: ≥ 2.10
Bundled data: 1.4 MB / 1 file
Download size: 2.3 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("permutes")

Format

Voeten, C. C. (2023). permutes: Permutation Tests for Time Series Data (Version 2.8) [Computer software]. https://doi.org/10.32614/CRAN.package.permutes

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for permutes version 2.8 [Data set]. HJJB, LLC. Data release v2026-08-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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