R Observatory: Metrics for permuco version 1.1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

permuco

1.1.3

Permutation Tests for Regression, (Repeated Measures) ANOVA/ANCOVA and Comparison of Signals

3packages depend

10.1Kdownloads / year

72.8%test coverage

13/13checks pass

Overview

About

Maintained by Jaromil FrossardFirst published 2018-01-107 releasesCRAN page ↗GitHub ↗

Functions to compute p-values based on permutation tests. Regression, ANOVA and ANCOVA, omnibus F-tests, marginal unilateral and bilateral t-tests are available. Several methods to handle nuisance variables are implemented (Kherad-Pajouh, S., & Renaud, O. (2010) doi:10.1016/j.csda.2010.02.015 ; Kherad-Pajouh, S., & Renaud, O. (2014) doi:10.1007/s00362-014-0617-3 ; Winkler, A. M., Ridgway, G. R., Webster, M. A., Smith, S. M., & Nichols, T. E. (2014) doi:10.1016/j.neuroimage.2014.01.060). An extension for the comparison of signals issued from experimental conditions (e.g. EEG/ERP signals) is provided. Several corrections for multiple testing are possible, including the cluster-mass statistic (Maris, E., & Oostenveld, R. (2007) doi:10.1016/j.jneumeth.2007.03.024) and the threshold-free cluster enhancement (Smith, S. M., & Nichols, T. E. (2009) doi:10.1016/j.neuroimage.2008.03.061).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("permuco", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jaromilfrossard/permuco")

Development version from jaromilfrossard/permuco. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-permuco

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-permuco

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-permuco

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.9 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.07

72.8%

Coverage · measured lines

100%

Documentation · exports

5

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 884 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 36%
References docs: 17%

Downloads

10.1K

CRAN downloads in the past year

Rank #4,032 · ~28/day · ~844/mo

Releases R versions

Daily download trend is not available in this view yet.

59730 days

2K90 days

10.1K1 year

Compare downloads with other packages →

Also on440 r2u25 autocran

Repository

GitHub ↗ jaromilfrossard/permuco

17Stars

2Forks

1Open issues

0Open PRs

0Releases

158Commits

4Contributors

158 commits · Last activity 2024-08-25 · +6.3% stars, 30d

Stars over time

2025-05-15 · 122026-08-08 · 17

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/jaromilfrossard/permuco on 2026-08-23.

Continuous integration (2)

GitHub ActionsTravis CI

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (5)

permuteMatrixstatsgraphicsRcpp

LinkingTo (1)

Rcpp

Suggests (5)

R.rsp testthat covr knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

0indirect

extraSuperpower ofemeantest permutes

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Jaromil Frossard

Author, Maintainer · added in 1.0.1

Authors (2)

Jaromil Frossard

Author, Maintainer · added in 1.0.1

Olivier Renaud

Author · added in 1.0.1

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.3Latest
2024-08-25 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.1.2
2022-06-30 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.1.1
2021-10-22 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.1.0
2019-12-19 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.0.2
2019-01-25 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.0.1
2018-02-14 · diff ↗
1.0.0
2018-01-10

Show 1 earlier events

R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2018-01-10
Total releases: 7 / 8 yrs
License: GPL (>= 2) OSI
Bundled data: 727 KB / 4 files
Download size: 1.1 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("permuco")

Format

Frossard, J., & Renaud, O. (2024). permuco: Permutation Tests for Regression, (Repeated Measures) ANOVA/ANCOVA and Comparison of Signals (Version 1.1.3) [Computer software]. https://doi.org/10.32614/CRAN.package.permuco

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for permuco version 1.1.3 [Data set]. HJJB, LLC. Data release v2026-08-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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