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penalized

L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model

v0.9-53 · Oct 2, 2025 · GPL (>= 2)

Description

Fitting possibly high dimensional penalized regression models. The penalty structure can be any combination of an L1 penalty (lasso and fused lasso), an L2 penalty (ridge) and a positivity constraint on the regression coefficients. The supported regression models are linear, logistic and Poisson regression and the Cox Proportional Hazards model. Cross-validation routines allow optimization of the tuning parameters.

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CRAN Check Status

6 NOTE
8 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 NOTE
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (6 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

compiled code

File ‘penalized/libs/penalized.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘penalized/libs/penalized.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-windows-x86_64

compiled code

File 'penalized/libs/x64/penalized.dll':
  Found non-API call to R: 'R_UnboundValue'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   5.2Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.2Mb
  sub-directories of 1Mb or more:
    libs   5.2Mb
NOTE r-patched-linux-x86_64

compiled code

File ‘penalized/libs/penalized.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   5.2Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.2Mb
  sub-directories of 1Mb or more:
    libs   5.2Mb

Reverse Dependencies (21)

depends

Dependency Network

Dependencies Reverse dependencies survival Rcpp DIFtree structree DIFboost DIFlasso GSelection c060 flassomsm hdnom mispr mvdalab penalizedclr pensim splmm catdata confSAM +6 more reverse deps penalized

Version History

new 0.9-53 Mar 10, 2026
updated 0.9-53 ← 0.9-52 diff Oct 1, 2025
updated 0.9-52 ← 0.9-51 diff Apr 22, 2022
updated 0.9-51 ← 0.9-50.1 diff Jul 11, 2018
updated 0.9-50.1 ← 0.9-50 diff Jun 29, 2018
updated 0.9-50 ← 0.9-49 diff Jan 31, 2017
updated 0.9-49 ← 0.9-47 diff Jan 26, 2017
updated 0.9-47 ← 0.9-46 diff May 26, 2016
updated 0.9-46 ← 0.9-45 diff Apr 18, 2016
updated 0.9-45 ← 0.9-42 diff Dec 18, 2014
updated 0.9-42 ← 0.9-41 diff Nov 5, 2012
updated 0.9-41 ← 0.9-40 diff Jul 18, 2012
updated 0.9-40 ← 0.9-39 diff Jun 20, 2012
updated 0.9-39 ← 0.9-38 diff Jun 18, 2012
updated 0.9-38 ← 0.9-37 diff Feb 15, 2012
updated 0.9-37 ← 0.9-36 diff Aug 18, 2011
updated 0.9-36 ← 0.9-35 diff Aug 8, 2011
updated 0.9-35 ← 0.9-34 diff Mar 3, 2011
updated 0.9-34 ← 0.9-33 diff Feb 3, 2011
updated 0.9-33 ← 0.9-32 diff Jan 3, 2011