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splmm

Simultaneous Penalized Linear Mixed Effects Models

v1.2.0 · Jun 13, 2024 · GPL-3

Description

Contains functions that fit linear mixed-effects models for high-dimensional data (p>>n) with penalty for both the fixed effects and random effects for variable selection. The details of the algorithm can be found in Luoying Yang PhD thesis (Yang and Wu 2020). The algorithm implementation is based on the R package 'lmmlasso'. Reference: Yang L, Wu TT (2020). Model-Based Clustering of Longitudinal Data in High-Dimensionality. Unpublished thesis.

Downloads

CRAN

342

Last 30 days

12959th

883

Last 90 days

3.1K

Last year

Trend: +50% (30d vs prior 30d)

r2u CRAN

24

Last 30 days

131

Last 90 days

538

Last year

Trend: -40% (30d vs prior 30d)

autoCRAN

1

Last 7 days

9

Last 30 days

1

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
NOTE 12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 8, 2026
NOTE r-devel-linux-x86_64-debian-gcc

R code for possible problems

Fatal error: cannot create 'R_TempDir'
WARNING 12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE Jun 7, 2026
WARNING r-devel-linux-x86_64-debian-gcc

for unstated dependencies in examples

Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp929SZk/file15601a2504d85b/splmmTuning.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/splmm.Rcheck/00install.out' for details.
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code

Structure

Lines of code

2,345

Files

26

Compiled share

19.5%

Has compiled src

Yes

Language breakdown

R 1,351 (57.6%)C/C++/src 458 (19.5%)Docs 536 (22.9%)

API

Exported functions

8

Internal functions

34

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

44.4%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

10%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.5.0

System requirements

C++ standard

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

6

First release

2020-09-21

Latest release

2024-06-13

Avg cadence

47 days

Cold removal rate

Dep drift

2

LOC over versions

v1.0: 2,163 LOCv1.1: 2,167 LOCv1.1.1: 2,281 LOCv1.1.2: 2,281 LOCv1.1.3: 2,349 LOCv1.2.0: 2,345 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies Rcpp emulator miscTools penalized ggplot2 gridExtra plot3D MASS progress splmm

Version History

7 tracked
new 1.2.0 Mar 10, 2026
updated 1.2.0 ← 1.1.3 diff Jun 12, 2024
updated 1.1.3 ← 1.1.2 diff Sep 7, 2021
updated 1.1.2 ← 1.1.1 diff Nov 21, 2020
updated 1.1.1 ← 1.1 diff Oct 4, 2020
updated 1.1 ← 1.0 diff Sep 20, 2020
new 1.0 Sep 20, 2020