R Observatory: Metrics for hdnom version 6.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

hdnom

6.2.1

Benchmarking and Visualization Toolkit for Penalized Cox Models

2packages depend

6.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Nan XiaoFirst published 2015-08-2821 releasesCRAN page ↗GitHub ↗

Creates nomogram visualizations for penalized Cox regression models, with the support of reproducible survival model building, validation, calibration, and comparison for high-dimensional data.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("hdnom", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("nanxstats/hdnom")

Development version from nanxstats/hdnom. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hdnom

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-hdnom

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-hdnom

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 9.5 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-07-16
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-17
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-05
11 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 151 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 92%
Documented parameters: 99%
Return-value docs: 27%
References docs: 7%

Downloads

6.1K

CRAN downloads in the past year

Rank #4,384 · ~17/day · ~506/mo

Releases R versions

Daily download trend is not available in this view yet.

46030 days

1.8K90 days

6.1K1 year

Compare downloads with other packages →

Also on469 r2u30 autocran89 c2d4u

Repository

GitHub ↗ nanxstats/hdnom

47Stars

11Forks

1Open issues

0Open PRs

17Releases

244Commits

2Contributors

high-dimensional-datasurvival-analysisbenchmarkpenalized-cox-modelslinear-regressionnomogram-visualization

License GPL-3.0 · 244 commits · Last activity 2026-07-28 · 0% stars, 30d

Stars over time

2025-06-24 · 442026-07-07 · 47

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/nanxstats/hdnom on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

Docs source (1)

README.Rmd

Lint, format, editor (2)

lintrRStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (7)

foreach ggplot2 glmnet gridExtra ncvreg penalizedsurvival

LinkingTo (0)

none

Suggests (4)

doParallel knitr ragg rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

gcomputation survivalSL

Code & Tests

Datasets

People & History

People (7)

Maintainer (1)

Nan Xiao

Author, Maintainer

Authors (3)

Nan Xiao

Author, Maintainer

Miao-Zhu Li

Author · added in 5.0

Qing-Song Xu

Author · added in 5.0

Contributors (4)

Werner Adler

Contributor · added in 6.0.1

Frank Harrell

Contributor · added in 6.0.0

Sergej Potapov

Contributor · added in 6.0.1

Matthias Schmid

Contributor · added in 6.0.1

Listed in earlier versions (2)

Miaozhu Li

no longer listed · 1.2 to 4.9

Qingsong Xu

no longer listed · 4.5 to 4.9

Package Timeline

21 releases. Pick two to compare their code metrics. R releases are shown for context.

6.2.1Latest
2026-07-28 · current release · diff ↗
6.2.0
2026-05-12 · diff ↗
R
R 4.6.0 released · 2026-04-24
6.1.0
2025-06-09 · diff ↗
R
R 4.5.0 released · 2025-04-11
6.0.4
2024-09-05 · diff ↗
R
R 4.4.0 released · 2024-04-24
6.0.3
2024-03-03 · diff ↗
6.0.2
2023-04-24 · diff ↗
R
R 4.3.0 released · 2023-04-21
6.0.1
2022-05-18 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
6.0.0
2019-06-23 · diff ↗
R
R 3.6.0 released · 2019-04-26

Show 17 earlier events

5.0
2018-05-14 · diff ↗
R
R 3.5.0 released · 2018-04-23
4.9
2017-09-29 · diff ↗
R
R 3.4.0 released · 2017-04-21
4.8
2017-03-25 · diff ↗
4.6
2017-01-08 · diff ↗
4.5
2016-12-25 · diff ↗
4.2
2016-10-22 · diff ↗
4.1
2016-08-05 · diff ↗
4.0
2016-07-05 · diff ↗
R
R 3.3.0 released · 2016-05-03
3.6
2016-03-25 · diff ↗
3.0
2016-01-04 · diff ↗
2.1
2015-10-27 · diff ↗
2.0
2015-09-16 · diff ↗
1.2
2015-08-28
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-08-28
Total releases: 21 / 11 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Bundled data: 258 KB / 2 files
Download size: 881 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Survival Analysis

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("hdnom")

Format

Xiao, N., Adler, W., Harrell, F., Li, M., Potapov, S., Schmid, M., & Xu, Q. (2026). hdnom: Benchmarking and Visualization Toolkit for Penalized Cox Models (Version 6.2.1) [Computer software]. https://doi.org/10.32614/CRAN.package.hdnom

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for hdnom version 6.2.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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