pQTLdata
A Collection of Proteome Panels and Metadata
Description
It aggregates protein panel data and metadata for protein quantitative trait locus (pQTL) analysis using 'pQTLtools' (<https://jinghuazhao.github.io/pQTLtools/>). The package includes data from affinity-based panels such as 'Olink' (<https://olink.com/>) and 'SomaScan' (<https://somalogic.com/>), as well as mass spectrometry-based panels from 'CellCarta' (<https://cellcarta.com/>), 'Seer' (<https://seer.bio/>) and 'SWATH-MS' (<doi:10.15252/msb.20178126>). The metadata encompasses updated annotations and publication details.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
package dependencies
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
package dependencies
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
package dependencies
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
package dependencies
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
ERROR 11 OK · 1 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 10, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building ‘pQTLdata.Rmd’ using rmarkdown Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75'' Quitting from pQTLdata.Rmd:125-153 [refdata] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...[truncated]... ment 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- failed re-building ‘pQTLdata.Rmd’ SUMMARY: processing the following file failed: ‘pQTLdata.Rmd’ Error: Vignette re-building failed. Execution halted
package dependencies
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
package dependencies
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’