R Observatory: Metrics for pQTLdata version 0.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

pQTLdata

0.7Package record

A Collection of Proteome Panels and Metadata

0packages depend

2.6Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Jing Hua ZhaoCRAN page ↗GitHub ↗Website ↗Issues ↗

It aggregates protein panel data and metadata for protein quantitative trait locus (pQTL) analysis using 'pQTLtools' (https://jinghuazhao.github.io/pQTLtools/). The package includes data from affinity-based panels such as 'Olink' (https://olink.com/) and 'SomaScan' (https://somalogic.com/), as well as mass spectrometry-based panels from 'CellCarta' (https://cellcarta.com/), 'Seer' (https://seer.bio/) and 'SWATH-MS' (doi:10.15252/msb.20178126). The metadata encompasses updated annotations and publication details.

Changes in 0.7

(2026//10/9)

refine _pkgdown.yml
Revise inst/scripts/cran.sh.
Suggests bookdown, Cairo.
Update caprion panel and add UniProt/caprion.fasta.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pQTLdata", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jinghuazhao/pQTLdata")

Development version from jinghuazhao/pQTLdata. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pqtldata

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pQTLdata

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pQTLdata

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.9 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-07-16
WARNING12 OK, 1 WARNING2026-07-15
OK12 OK2026-04-25

Show 2 earlier changesHide 2 earlier changes

NOTE12 OK, 2 NOTE2026-03-11
ERROR11 OK, 1 NOTE, 2 ERROR2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.7

READMEYes · 89 wordsVignettesYes · 1 · evaluation depends on the environmentNEWSYes · 100% structured · mentions 0.7Citation fileNoWebsiteYes · pkgdown

Help pages: 14 (14 internal)includes a package overview page
Examples that run: 0%1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: not tracked
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 43% with a bibliography file

Vignettes (1)

pQTLdata

How these are measured

Downloads

2.6K

CRAN downloads in the past year

Rank #17,688 · ~7/day · ~213/mo

Releases R versions

Daily download trend is not available in this view yet.

29030 days

72390 days

2.6K1 year

Compare downloads with other packages →

Also on93 r2u5 autocran

How downloads are counted

Repository

jinghuazhao/pqtldata ↗Account: jinghuazhao

3Stars

2Forks

0Open issues

0Open PRs

1Releases

626Commits

1Commit identities

626 commits · Last activity 2026-10-09

Responsiveness

not measured

Stars over time

2025-06-12 · 22026-07-07 · 3

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 1 family in the upstream repository

Checks run against github.com/jinghuazhao/pqtldata on 2026-10-18.

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-10-09

pkgdown site last built 2026-10-09

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Installing pQTLdata adds 7 packages (3 with compiled code, 2.3 MB of source tarballs). Heaviest: rbibutils 1.1 MB, knitr 479 KB, Rdpack 370 KB.

Depends (1)

R >= 3.5.0

Imports (2)

knitr Rdpack

LinkingTo (0)

none

Suggests (10)

bookdown dplyrgridCairo EnsDb.Hsapiens.v75 ensembldb IRanges org.Hs.eg.db S4Vectors VennDiagram

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Jing Hua Zhao

Author, Maintainer since 0.5 (2025)

Benjamin Altmann

Contributor

Uwe Ligges

Contributor

Brian Ripley

Contributor · added in 0.6

Releases (3)

Pick two releases to compare their code metrics.

0.7Latest
record
2026-10-09 · current release · diff ↗ ·
listed once in CRAN's queue
Seen in one reading of CRAN's incoming queue, at 2026-10-09 14:50 UTC, so it stayed less than the time between readings.
R
R 4.6.0 released · 2026-04-24
0.6
record
2026-03-09 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.5
record
2025-03-07
R
R 4.4.0 released · 2024-04-24

Across CRAN, the median accepted release of the past year spent 23 hours in the queue, 90% under 11 days.How queue time is measured

Package metadata

First published: 2025-03-07
Total releases: 3 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Bundled data: 1.2 MB / 14 files
Download size: 2.9 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pQTLdata")

Format

Zhao, J. H., Altmann, B., Ligges, U., & Ripley, B. (2026). pQTLdata: A Collection of Proteome Panels and Metadata (Version 0.7) [Computer software]. https://doi.org/10.32614/CRAN.package.pQTLdata

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pQTLdata version 0.7 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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