R Observatory: Metrics for nodiv version 1.4.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

nodiv

1.4.4

Compares the Distribution of Sister Clades Through a Phylogeny

0packages depend

517downloads / year

26.9%test coverage

13/13checks pass

Overview

About

Maintained by Michael Krabbe BorregaardFirst published 2026-06-3023 releasesCRAN page ↗GitHub ↗

An implementation of the nodiv algorithm, see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. (2014) "Node-based analysis of species distributions." Methods in Ecology and Evolution 5(11): 1225-1235. doi:10.1111/2041-210X.12283. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("nodiv", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mkborregaard/nodiv")

Development version from mkborregaard/nodiv. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-nodiv

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-nodiv

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-nodiv

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 7.0 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.05

26.9%

Coverage · measured lines

100%

Documentation · exports

6

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-01
8 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 193 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 98%
Return-value docs: 100%
References docs: 19%

Downloads

517

CRAN downloads in the past year

Rank #23,267 · ~1/day · ~43/mo

Releases R versions

Daily download trend is not available in this view yet.

20030 days

43090 days

5171 year

Compare downloads with other packages →

Also on97 r2u24 autocran1.8K conda_forge612 bioconda54 c2d4u

Repository

GitHub ↗ mkborregaard/nodiv

2Stars

3Forks

1Open issues

0Open PRs

2Releases

179Commits

4Contributors

179 commits · Last activity 2026-06-29

Stars over time

2019-04-13 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/mkborregaard/nodiv on 2026-08-16.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0

Imports (6)

picante raster ape sp veganutils

LinkingTo (0)

none

Suggests (4)

RColorBrewerparalleltestthat colorspace

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Michael Krabbe Borregaard

Author, Maintainer

Authors (1)

Michael Krabbe Borregaard

Author, Maintainer

Listed in earlier versions (1)

Borregaard

no longer listed · 1.4.3 to 1.4.4

Package Timeline

23 releases. Pick two to compare their code metrics. R releases are shown for context.

1.4.4Latest
2026-06-30 · current release · diff ↗
unarchivedReturned to CRAN
2026-06-30
R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-12-22
issues were not corrected despite reminders
1.4.3
2025-09-12 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.4.2
2023-08-21 · diff ↗
1.4.1
2023-05-04 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.4.0
2020-05-26 · diff ↗
unarchivedReturned to CRAN
2020-05-26
R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2019-12-21
check problems were not corrected in time

Show 24 earlier events

R
R 3.6.0 released · 2019-04-26
1.3.0
2018-11-07 · diff ↗
1.2.0
2018-04-23 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.1.9
2018-03-13 · diff ↗
1.1.8
2017-10-31 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.1.6
2017-02-27 · diff ↗
R
R 3.3.0 released · 2016-05-03
1.1.4
2016-02-10 · diff ↗
1.1.3
2016-02-07 · diff ↗
1.1.2
2015-10-26 · diff ↗
1.1.1
2015-10-08 · diff ↗
1.1.0
2015-06-14 · diff ↗
1.0.4
2015-06-13 · diff ↗
R
R 3.2.0 released · 2015-04-16
1.0.3
2015-03-26 · diff ↗
1.0.2
2015-03-05 · diff ↗
1.0.1
2015-01-06 · diff ↗
1.0.0
2014-12-01 · diff ↗
0.9.3
2014-11-22 · diff ↗
0.9.2
2014-11-18 · diff ↗
0.9.1
2014-11-13
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2026-06-30
Total releases: 23 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.0
Bundled data: 249 KB / 1 file
Download size: 300 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("nodiv")

Format

Borregaard, M. K. (2026). nodiv: Compares the Distribution of Sister Clades Through a Phylogeny (Version 1.4.4) [Computer software]. https://doi.org/10.32614/CRAN.package.nodiv

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for nodiv version 1.4.4 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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