R Observatory: Metrics for nimbleAPT version 1.0.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

nimbleAPT

1.0.7

Adaptive Parallel Tempering for 'NIMBLE'

1packages depend

2.9Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by David PleydellFirst published 2021-11-224 releasesCRAN page ↗GitHub ↗

Functions for adaptive parallel tempering (APT) with NIMBLE models. Adapted from 'Lacki' & 'Miasojedow' (2016) DOI:10.1007/s11222-015-9579-0 and 'Miasojedow, Moulines and Vihola' (2013) DOI:10.1080/10618600.2013.778779.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("nimbleAPT", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("DRJP/nimbleAPT")

Development version from DRJP/nimbleAPT. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-nimbleapt

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-nimbleAPT

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-nimbleAPT

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 7.9 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

2

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 22 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 25%

Downloads

2.9K

CRAN downloads in the past year

Rank #15,192 · ~8/day · ~238/mo

Releases R versions

Daily download trend is not available in this view yet.

18930 days

68490 days

2.9K1 year

Compare downloads with other packages →

Also on102 r2u21 autocran

Repository

GitHub ↗ drjp/nimbleapt

1Stars

0Forks

0Open issues

0Open PRs

4Releases

122Commits

4Contributors

mcmc-samplingmcmc-methods

122 commits · Last activity 2025-01-10

Stars over time

2022-08-29 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

Checks run against github.com/drjp/nimbleapt on 2026-08-16.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.1.2nimble

Imports (1)

methods

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown coda

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

runMCMCbtadjust

Code & Tests

People & History

People (5)

Maintainer (1)

David Pleydell

Author, Maintainer, Copyright holder

Authors (1)

David Pleydell

Author, Maintainer, Copyright holder

Copyright holders (5)

David Pleydell

Author, Maintainer, Copyright holder

Copyright holder

Copyright holder

Copyright holder

Copyright holder

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.0.7Latest
2025-02-17 · current release · diff ↗
unarchivedReturned to CRAN
2025-02-17
archivedRemoved from CRAN
2025-02-02
issues were not corrected in time
1.0.6
2024-04-24 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.5
2024-04-22 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0.4
2021-11-22
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-11-22
Total releases: 4 / 5 yrs
License: BSD_3_clause + file LICENSE OSI
Minimum R: ≥ 3.1.2
Download size: 193 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("nimbleAPT")

Format

Pleydell, D., Michaud, N., Paciorek, C., Turek, D., & de Valpine, P. (2025). nimbleAPT: Adaptive Parallel Tempering for 'NIMBLE' (Version 1.0.7) [Computer software]. https://doi.org/10.32614/CRAN.package.nimbleAPT

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for nimbleAPT version 1.0.7 [Data set]. HJJB, LLC. Data release v2026-08-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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