R Observatory: Metrics for morseTKTD version 0.1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

morseTKTD

0.1.3Package record

Bayesian Inference of TKTD Models

0packages depend

2.5Kdownloads / year

44.6%test coverage

13/13flavors OK

Overview

About

Maintained by Virgile BaudrotCRAN page ↗

Advanced methods for a valuable quantitative environmental risk assessment using Bayesian inference of survival Data with toxicokinetics toxicodynamics (TKTD) models. Among others, it facilitates Bayesian inference of the general unified threshold model of survival (GUTS). See models description in Jager et al. (2011) doi:10.1021/es103092a and implementation using Bayesian inference in Baudrot and Charles (2019) doi:10.1038/s41598-019-47698-0.

Changes in 0.1.3

Fix typo for CRAN submission: add values to documentation & add test files to the archive.

From NEWS in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("morseTKTD", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-morsetktd

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-morseTKTD

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-morseTKTD

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 20.1 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-07-29
ERROR12 OK, 1 ERROR2026-07-27
OK13 OK2026-06-09

Show 5 earlier changesHide 5 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK12 OK2026-04-25
NOTE11 OK, 3 NOTE2026-04-22
ERROR10 OK, 3 NOTE, 1 ERROR2026-04-18
NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.3

READMEYes · 254 wordsVignettesYes · 2 · dynamicNEWSYes · 100% structured · mentions 0.1.3Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 36includes a package overview page
Examples that run: no examples
Exported functions with examples: 0%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 28%

Vignettes (2)

Models HTML
Tutorial

How these are measured

Downloads

2.5K

CRAN downloads in the past year

Rank #18,371 · ~7/day · ~204/mo

Releases R versions

Daily download trend is not available in this view yet.

32530 days

71290 days

2.5K1 year

Compare downloads with other packages →

Also on353 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Installing morseTKTD adds 61 packages (29 with compiled code, 50 MB of source tarballs). Heaviest: BH 14 MB, ggplot2 6.0 MB, loo 2.7 MB.

Depends (1)

R >= 3.5.0

Imports (10)

deSolve ggplot2 gridExtramethodsRcpp RcppParallel rstan rstantools (>= 2.4.0)testthat zoo

LinkingTo (6)

BH Rcpp RcppEigen RcppParallel rstan StanHeaders (>= 2.18.0)

Suggests (3)

knitr rmarkdown xml2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (9)

Virgile Baudrot

Author, Maintainer since 0.1.3 (2025)

Sandrine Charles

Author

Marie Laure Delignette-Muller

Author

Philippe Veber

Author

Benoit Goussen

Contributor

Nils Kehrein

Contributor

Guillaume Kon-Kam-King

Contributor

Christelle Lopes

Contributor

Alexander Singer

Contributor

Releases (1)

R
R 4.6.0 released · 2026-04-24
0.1.3Latest
record
2025-06-04 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-06-04
Total releases: 1 / 1 yrs
License: AGPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Bundled data: 108 KB / 9 files
Download size: 885 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("morseTKTD")

Format

Baudrot, V., Charles, S., Delignette-Muller, M. L., Goussen, B., Kehrein, N., Kon-Kam-King, G., Lopes, C., Singer, A., & Veber, P. (2025). morseTKTD: Bayesian Inference of TKTD Models (Version 0.1.3) [Computer software]. https://doi.org/10.32614/CRAN.package.morseTKTD

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for morseTKTD version 0.1.3 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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