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morseTKTD

Bayesian Inference of TKTD Models

v0.1.3 · Jun 4, 2025 · AGPL (>= 3)

Description

Advanced methods for a valuable quantitative environmental risk assessment using Bayesian inference of survival Data with toxicokinetics toxicodynamics (TKTD) models. Among others, it facilitates Bayesian inference of the general unified threshold model of survival (GUTS). See models description in Jager et al. (2011) <doi:10.1021/es103092a> and implementation using Bayesian inference in Baudrot and Charles (2019) <doi:10.1038/s41598-019-47698-0>.

Downloads

CRAN

269

Last 30 days

18037th

622

Last 90 days

2.1K

Last year

Trend: +72.4% (30d vs prior 30d)

r2u CRAN

24

Last 30 days

115

Last 90 days

406

Last year

Trend: -40% (30d vs prior 30d)

autoCRAN

2

Last 7 days

9

Last 30 days

0

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR r-devel-linux-x86_64-debian-gcc

whether package can be installed

Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/morseTKTD.Rcheck/00install.out’ for details.
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is 86.8Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs  85.2Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 87.8Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs  86.1Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs   4.2Mb
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/morseTKTD.Rcheck/00install.out' for details.
NOTE r-oldrel-macos-arm64

installed package size

installed size is 86.8Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs  85.2Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 87.8Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs  86.1Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs   4.2Mb
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is 86.8Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs  85.2Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 87.8Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs  86.1Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs   4.2Mb

Code

Structure

Lines of code

11,665

Files

115

Compiled share

52.8%

Has compiled src

Yes

Language breakdown

R 2,508 (21.5%)C/C++/src 6,159 (52.8%)Tests 869 (7.4%)Docs 1,366 (11.7%)Vignettes 763 (6.5%)

API

Exported functions

24

Internal functions

42

Recent export changes

v0.1.3+24 build_priors, compute_Ninit, compute_Nsurv +21 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.35

testthat edition

3

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

Roxygen coverage

100%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

40%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.5.0

System requirements

1

C++ standard

C++17

License

AGPL (>= 3)

License flags

SPDX valid, OSI approved

History

Versions

1

First release

2025-06-04

Latest release

2025-06-04

Avg cadence

Cold removal rate

Dep drift

0

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies deSolve ggplot2 gridExtra Rcpp RcppParallel rstan rstantools (>= 2.4.0) testthat zoo morseTKTD

Version History

1 tracked
new 0.1.3 Mar 10, 2026

R Observatory began tracking this package on Mar 10, 2026; it first appeared on CRAN Jun 4, 2025. Releases before tracking aren’t shown.