R Observatory: Metrics for mixKernel version 0.9-2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

mixKernel

0.9-2Package record

Omics Data Integration Using Kernel Methods

0packages depend

3.4Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Nathalie VialaneixCRAN page ↗Website ↗Issues ↗

Kernel-based methods are powerful methods for integrating heterogeneous types of data. mixKernel aims at providing methods to combine kernel for unsupervised exploratory analysis. Different solutions are provided to compute a meta-kernel, in a consensus way or in a way that best preserves the original topology of the data. mixKernel also integrates kernel PCA to visualize similarities between samples in a non linear space and from the multiple source point of view doi:10.1093/bioinformatics/btx682. A method to select (as well as funtions to display) important variables is also provided doi:10.1093/nargab/lqac014.

Install

R (CRAN)Ubuntu (r2u)

install.packages("mixKernel", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mixkernel

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 6.7 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-10-12
ERROR12 OK, 1 ERROR2026-10-09
OK13 OK2026-09-06
ERROR12 OK, 1 ERROR2026-09-04
OK13 OK2026-08-28

Show 19 earlier changesHide 19 earlier changes

ERROR12 OK, 1 ERROR2026-08-26
OK13 OK2026-08-05
ERROR11 OK, 2 ERROR2026-07-29
OK13 OK2026-07-23
ERROR12 OK, 1 ERROR2026-07-19
OK13 OK2026-06-07
ERROR12 OK, 1 ERROR2026-06-05
OK13 OK2026-06-01
ERROR11 OK, 2 ERROR2026-05-28
OK13 OK2026-05-22
ERROR11 OK, 2 ERROR2026-05-20
OK13 OK2026-05-09
ERROR12 OK, 1 ERROR2026-04-30
OK14 OK2026-04-16
ERROR13 OK, 1 ERROR2026-04-11
OK14 OK2026-03-30
ERROR13 OK, 1 ERROR2026-03-29
OK14 OK2026-03-21
ERROR11 OK, 3 ERROR2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.9-2

README· In the repository, left out of the releaseVignettesYes · 2 · dynamicNEWSYes · 100% structured · does not mention 0.9-2Citation fileYes · cites a publicationWebsiteYes

Help pages: 10
Examples that run: 100%9 run in a plain check
Exported functions with examples: 100%
Documented parameters: 93%
Return-value docs: 89%
Help pages citing references: 80%

Vignettes (2)

How these are measured

Downloads

3.4K

CRAN downloads in the past year

Rank #9,101 · ~9/day · ~281/mo

Releases R versions

Daily download trend is not available in this view yet.

41930 days

1.1K90 days

3.4K1 year

Compare downloads with other packages →

Also on106 r2u964 bioconda

How downloads are counted

Repository

forgemia.inra.fr/genotoul-bioinfo/mixkernel ↗

1Stars

0Forks

6Open issues

0Open PRs

0Releases

92Commits

4Commit identities

R-packageRstatisticsMIAT software

92 commits · Last activity 2025-04-25

Responsiveness

How these are sampled

PRs merged (all time): 67%
Median days to close, 50 most recently updated closed issues: GitHub only
Median days to close, 50 most recently updated closed PRs: GitHub only

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against forgemia.inra.fr/genotoul-bioinfo/mixkernel on 2026-10-21.

Docs source (1)

GitHub Pages site

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Installing mixKernel adds 37 packages (18 with compiled code, 27 MB of source tarballs). Heaviest: ggplot2 6.0 MB, corrplot 3.6 MB, Rcpp 1.8 MB. 2 more not on CRAN are not measured.

Depends (4)

R >= 3.5.0mixOmics ggplot2 reticulate

Imports (9)

vegan phyloseq corrplot psych quadprog LDRToolsMatrixmethodsmarkdown

LinkingTo (0)

none

Suggests (2)

rmarkdown knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (5)

Nathalie Vialaneix

Author, Maintainer since 0.9 (2023) · added in 0.4

Celine Brouard

Author · added in 0.4

Remi Flamary

Author · added in 0.4

Julien Henry

Author · added in 0.9

Jerome Mariette

Author

Previously maintained by Jerome Mariette (0.1 to 0.8).

Listed in earlier versions (1)

Nathalie Villa-Vialaneix

no longer listed · 0.1 to 0.3

Releases (11)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.9-2Latest
record
2025-04-19 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.9-1
record
2024-01-27 · diff ↗
0.9
record
2023-09-18 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.8
record
2022-01-13 · diff ↗
0.7
record
2021-06-15 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.6
record
2021-05-17 · diff ↗
0.5
record
2021-03-30 · diff ↗ ·
removed 1 export
ukfs

added 2 exports
select.features, center.scale
R
R 4.0.0 released · 2020-04-24
0.4
record
2020-02-26 · diff ↗ ·
added 1 export
ukfs
R
R 3.6.0 released · 2019-04-26

Show 5 earlier eventsHide 5 earlier events

0.3
record
2018-11-26 · diff ↗
0.2
record
2018-09-11 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.1
record
2017-05-18
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-05-18
Total releases: 11 / 9 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 317 KB / 2 files
Download size: 2.2 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("mixKernel")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/bioinformatics/btx682, 10.1093/nargab/lqac014.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for mixKernel version 0.9-2 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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