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mixKernel

Omics Data Integration Using Kernel Methods

v0.9-2 · Apr 19, 2025 · GPL (>= 2)

Description

Kernel-based methods are powerful methods for integrating heterogeneous types of data. mixKernel aims at providing methods to combine kernel for unsupervised exploratory analysis. Different solutions are provided to compute a meta-kernel, in a consensus way or in a way that best preserves the original topology of the data. mixKernel also integrates kernel PCA to visualize similarities between samples in a non linear space and from the multiple source point of view <doi:10.1093/bioinformatics/btx682>. A method to select (as well as funtions to display) important variables is also provided <doi:10.1093/nargab/lqac014>.

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r-devel-linux-x86_64-debian-gcc OK
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r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
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r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 30, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 28, 2026
ERROR r-release-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.5/mixKernel.Rcheck/00install.out' for details.
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 20, 2026
ERROR 11 OK · 0 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE Mar 10, 2026
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/mixKernel.Rcheck/00install.out' for details.
ERROR r-patched-linux-x86_64

package dependencies

Package required but not available: ‘phyloseq’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
ERROR r-release-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.5/mixKernel.Rcheck/00install.out' for details.

Dependency Network

Dependencies Reverse dependencies mixOmics ggplot2 reticulate vegan phyloseq corrplot psych quadprog LDRTools Matrix markdown mixKernel

Version History

new 0.9-2 Mar 10, 2026
updated 0.9-2 ← 0.9-1 diff Apr 18, 2025
updated 0.9-1 ← 0.9 diff Jan 26, 2024
updated 0.9 ← 0.8 diff Sep 17, 2023
updated 0.8 ← 0.7 diff Jan 12, 2022
updated 0.7 ← 0.6 diff Jun 14, 2021
updated 0.6 ← 0.5 diff May 16, 2021
updated 0.5 ← 0.4 diff Mar 29, 2021
updated 0.4 ← 0.3 diff Feb 25, 2020
updated 0.3 ← 0.2 diff Nov 25, 2018
updated 0.2 ← 0.1 diff Sep 10, 2018
new 0.1 May 17, 2017