R Observatory: Metrics for metatools version 0.3.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

metatools

0.3.0

Enable the Use of 'metacore' to Help Create and Check Dataset

5packages depend

21Kdownloads / year

86.1%test coverage

13/13checks pass

Overview

About

Maintained by Liam HobbyFirst published 2022-04-207 releasesCRAN page ↗GitHub ↗

Uses the metadata information stored in 'metacore' objects to check and build metadata associated columns.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("metatools", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("pharmaverse/metatools")

Development version from pharmaverse/metatools. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-metatools

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-metatools

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-metatools

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.2 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.82

86.1%

Coverage · measured lines

95%

Documentation · exports

10

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 113 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 95%
References docs: 0%

Downloads

21K

CRAN downloads in the past year

Rank #3,229 · ~57/day · ~1.7K/mo

Releases R versions

Daily download trend is not available in this view yet.

97930 days

3.5K90 days

21K1 year

Compare downloads with other packages →

Also on121 r2u29 autocran749 conda_forge

Repository

GitHub ↗ pharmaverse/metatools

24Stars

7Forks

15Open issues

3Open PRs

6Releases

404Commits

17Contributors

404 commits · Last activity 2026-06-17 · 0% stars, 30d

Stars over time

2025-04-17 · 132026-07-13 · 24

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/pharmaverse/metatools on 2026-08-23.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Development tooling

AI-assisted toolingBeta

Uses AI-assisted development tooling (declared in repo)

Earliest detected marker: copilot on 2025-11-21

copilot

Most recent: copilot on 2025-11-21

Evidence

copilot: on 2025-11-21 · evidence A, PR · sole bot-author seen

How this is detected·Detection ruleset v2 (updated 2026-07-29)

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (10)

cli dplyr lifecycle magrittr metacore purrr rlang stringr tibble tidyr

LinkingTo (0)

none

Suggests (6)

covr haven pharmaversesdtm safetyData spelling testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

5direct

0indirect

admiralneuro admiralonco admiralvaccine pharmaverseadam pharmaversesdtm

Code & Tests

People & History

People (9)

Maintainer (1)

Liam Hobby

Author, Maintainer · added in 0.2.0

Authors (6)

Liam Hobby

Author, Maintainer · added in 0.2.0

Bill Denney

Author · added in 0.2.0

Christina Fillmore

Author

Tamara Senior

Author · added in 0.1.6

Mike Stackhouse

Author

Jana Stoilova

Author · added in 0.1.6

Copyright holders (3)

Atorus Research LLC

Copyright holder, Funder

F. Hoffmann-La Roche AG

Copyright holder, Funder

GlaxoSmithKline LLC

Copyright holder, Funder

Funders (3)

Atorus Research LLC

Copyright holder, Funder

F. Hoffmann-La Roche AG

Copyright holder, Funder

GlaxoSmithKline LLC

Copyright holder, Funder

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

0.3.0Latest
2026-04-28 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.2.0
2025-07-16 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.1.6
2024-07-23 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.5
2023-03-13 · diff ↗
unarchivedReturned to CRAN
2023-03-13
archivedRemoved from CRAN
2023-03-01
requires archived package 'metacore'
0.1.4
2023-02-13 · diff ↗
0.1.3
2022-10-06 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.1
2022-04-20
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-04-20
Total releases: 7 / 4 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Download size: 246 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("metatools")

Format

Hobby, L., Atorus Research LLC, F. Hoffmann-La Roche AG, GlaxoSmithKline LLC, Denney, B., Fillmore, C., Senior, T., Stackhouse, M., & Stoilova, J. (2026). metatools: Enable the Use of 'metacore' to Help Create and Check Dataset (Version 0.3.0) [Computer software]. https://doi.org/10.32614/CRAN.package.metatools

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for metatools version 0.3.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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