R Observatory: Metrics for pharmaversesdtm version 1.5.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

pharmaversesdtm

1.5.0Package record

SDTM Test Data for the 'Pharmaverse' Family of Packages

1packages dependsuggested by 12

29.6Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Lina PatilCRAN page ↗GitHub ↗Website ↗Declared funders: Cytel Inc., F. Hoffmann-La Roche AG and 1 more

A set of Study Data Tabulation Model (SDTM) datasets from the Clinical Data Interchange Standards Consortium (CDISC) pilot project used for testing and developing Analysis Data Model (ADaM) datasets inside the pharmaverse family of packages. SDTM dataset specifications are described in the CDISC SDTM implementation guide, accessible by creating a free account on https://www.cdisc.org/.

Changes in 1.5.0

New Features

Updated oe_ophtha to include new tests applicable for Geographic atrophy (GA) indication. (#247)
Added rs_onco_lymphoma RS domain dataset for lymphoma studies using Lugano 2014 response criteria. (#235)
Added pTau-181 to lb_neuro. (#244)

Documentation

Added the link for "Preview SDTM vignette" in README.md. (#242)

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pharmaversesdtm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("pharmaverse/pharmaversesdtm")

Development version from pharmaverse/pharmaversesdtm. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pharmaversesdtm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pharmaversesdtm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pharmaversesdtm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.4 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.5.0

READMEYes · 944 wordsVignettesNoNEWSYes · 100% structured · mentions 1.5.0Citation fileNoWebsiteYes · pkgdown

The repository also keeps web-only articles.

Help pages: 66 (1 internal)includes a package overview page
Examples that run: no examples
Exported functions with examples: 0%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 0%

How these are measured

Downloads

29.6K

CRAN downloads in the past year

Rank #3,075 · ~81/day · ~2.5K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.6K30 days

4.2K90 days

29.6K1 year

Compare downloads with other packages →

Also on235 r2u6 autocran

How downloads are counted

Repository

pharmaverse/pharmaversesdtm ↗Organization: pharmaverse

41Stars

20Forks

4Open issues

1Open PRs

10Releases

672Commits

50Commit identities

License file reads as Apache-2.0 · 672 commits · Last activity 2026-09-03 · +5.1% stars, 30d · Default branch at 1.5.0.9003, ahead of CRAN 1.5.0 (checked 2026-10-22)

Responsiveness

How these are sampled

PRs merged (all time): 92%
Median days to close, 50 most recently updated closed issues: 19
Median days to close, 50 most recently updated closed PRs: 5

Stars over time

2026-07-14 · 372026-10-13 · 41

How these are measured

PracticesBeta

10 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/pharmaverse/pharmaversesdtm on 2026-10-22.

Continuous integration (1)

GitHub Actions

Governance and community (3)

Issue templatesPR templateCODEOWNERS

Docs source (2)

pkgdown

GitHub Pages site last deployed 2026-09-03

pkgdown site last built 2026-07-02

Reproducibility and dev environment (2)

data-raw/Dev Container

Show all practicesHide 2 practices

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

AI coding toolsBeta

This repository shows signs of AI coding tools.

GitHub Copilotfirst seen 2026-03-17
Pull request: opened by its own account
Commits: 2 by its own account

Counts are commits, not lines of code. Commits by a tool's accounts count once across all of its accounts. Commits crediting it are the largest count among its credit lines, a minimum.How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Installing pharmaversesdtm adds no packages beyond those that come with R.

Depends (1)

R >= 3.5.0

Imports (0)

none

LinkingTo (0)

none

Suggests (17)

admiraldev cli covr devtools DT htmltools knitr lintr metatools pkgdown reactable rmarkdown roxygen2 spelling testthat usethis yaml

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Depends 1

Suggested by 12

Show all 13 packagesHide all 13 packages

Depends, Imports or LinkingTo, most downloaded first

pharmaversesdtmjnj

Suggests, most downloaded first

admiral metatools admiralonco admiralophtha admiralvaccine admiralpeds admiralmetabolic admiralneuro trialdiff ducklake RESIDE pharmaverseraw

How these are counted

Code & Tests

Datasets

People & History

People (13)

Lina Patil

Author, Maintainer since 1.3.1 (2025) · added in 1.3.0

Stefan Bundfuss

Author

Kristin Dahnert

Author · added in 1.4.0

Fanny Gautier

Author · added in 1.3.0

Edoardo Mancini

Author

Tomoyuki Namai

Author · added in 1.3.0

Vinh Nguyen

Author · added in 1.2.0

Kiran Peddamudium

Author · added in 1.5.0

Gerardo Jose Rodriguez

Author · added in 1.4.1

Vladyslav Shuliar

Author · added in 1.1.0

Cytel Inc.

Copyright holder, Funder · added in 1.3.1

F. Hoffmann-La Roche AG

Copyright holder, Funder · added in 1.3.1

GlaxoSmithKline LLC

Copyright holder, Funder · added in 1.3.1

Previously maintained by Edoardo Mancini (0.1.1 to 1.3.0).

Listed in earlier versions (5)

Show 5 peopleHide 5 people

Gayatri G

no longer listed · 0.1.1 to 1.3.0

Pooja Kumari

no longer listed · 0.1.1 to 1.3.0

Kangjie Zhang

no longer listed · 0.1.1 to 1.3.0

Zelos Zhu

no longer listed · 0.1.1 to 1.3.0

Sadchla Mascary

no longer listed · 1.0.0 to 1.3.0

Releases (10)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.5.0Latest
record
2026-03-30 · current release · diff ↗
1.4.1
record
2026-03-30 · diff ↗
1.4.0
record
2026-01-10 · diff ↗
1.3.1
record
2025-08-21 · diff ↗
1.3.0
record
2025-07-04 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.2.0
record
2025-01-23 · diff ↗
1.1.0
record
2024-10-25 · diff ↗
1.0.0
record
2024-06-06 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.2.0
record
2023-12-01 · diff ↗
0.1.1
record
2023-09-05
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-09-05
Total releases: 10 / 3 yrs
License: Apache License (>= 2.0)
Minimum R: ≥ 3.5.0
Bundled data: 999 KB / 64 files
Download size: 1.1 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pharmaversesdtm")

Format

Patil, L., Cytel Inc., F. Hoffmann-La Roche AG, GlaxoSmithKline LLC, Bundfuss, S., Dahnert, K., Gautier, F., Mancini, E., Namai, T., Nguyen, V., Peddamudium, K., Rodriguez, G. J., & Shuliar, V. (2026). pharmaversesdtm: SDTM Test Data for the 'Pharmaverse' Family of Packages (Version 1.5.0) [Computer software]. https://doi.org/10.32614/CRAN.package.pharmaversesdtm

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pharmaversesdtm version 1.5.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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