R Observatory: Metrics for metaboData version 0.6.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

metaboData

0.6.4

Example Metabolomics Data Sets

0packages depend

3.5Kdownloads / year

91.7%test coverage

13/13checks pass

Overview

About

Maintained by Jasen FinchFirst published 2021-08-203 releasesCRAN page ↗GitHub ↗

Data sets from a variety of biological sample matrices, analysed using a number of mass spectrometry based metabolomic analytical techniques. The example data sets are stored remotely using GitHub releases https://github.com/aberHRML/metaboData/releases which can be accessed from R using the package. The package also includes the 'abr1' FIE-MS data set from the 'FIEmspro' package https://github.com/aberHRML/FIEmspro doi:10.1038/nprot.2007.511.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("metaboData", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("aberHRML/metaboData")

Development version from aberHRML/metaboData. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-metabodata

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-metaboData

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-metaboData

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.20

91.7%

Coverage · measured lines

90%

Documentation · exports

10

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 10%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

3.5K

CRAN downloads in the past year

Rank #10,213 · ~9/day · ~288/mo

Releases R versions

Daily download trend is not available in this view yet.

25230 days

94290 days

3.5K1 year

Compare downloads with other packages →

Also on134 r2u29 autocran19 c2d4u

Repository

GitHub ↗ aberhrml/metabodata

2Stars

0Forks

0Open issues

0Open PRs

13Releases

161Commits

1Contributors

metabolomicsdatadatasetsmass-spectrometryfie-hrmsfie-ms

License GPL-3.0 · 161 commits · Last activity 2026-07-02

Stars over time

2025-05-19 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/aberhrml/metabodata on 2026-08-23.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

Nix

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (10)

dplyr fs magrittr piggyback purrr readr rlang stringr tibble yaml

LinkingTo (0)

none

Suggests (5)

testthat covr knitr rmarkdown prettydoc

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Jasen Finch

Author, Maintainer

Authors (1)

Jasen Finch

Author, Maintainer

Contributors (3)

Manfred Beckmann

Contributor

David Enot

Contributor

Wanchang Lin

Contributor

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

0.6.4Latest
2026-07-03 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.6.3
2022-02-16 · diff ↗
0.6.2
2021-08-20
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-08-20
Total releases: 3 / 5 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.4.0
Bundled data: 1.1 MB / 1 file
Download size: 1.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("metaboData")

Format

Finch, J., Beckmann, M., Enot, D., & Lin, W. (2026). metaboData: Example Metabolomics Data Sets (Version 0.6.4) [Computer software]. https://doi.org/10.32614/CRAN.package.metaboData

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for metaboData version 0.6.4 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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