Description
Constructs genetic linkage maps in autopolyploid full-sib populations. Uses pairwise recombination fraction estimation as the first source of information to sequentially position allelic variants in specific homologous chromosomes. For situations where pairwise analysis has limited power, the algorithm relies on the multilocus likelihood obtained through a hidden Markov model (HMM). Methods are described in Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378> and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
package dependencies
Packages required but not available: 'ggpubr', 'smacof', 'plotly' Package suggested but not available for checking: ‘polymapR’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 2, 2026
ERROR 11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 25, 2026
package dependencies
Package required but not available: ‘smacof’ Package suggested but not available for checking: ‘polymapR’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 12.6Mb
sub-directories of 1Mb or more:
R 2.7Mb
data 3.0Mb
libs 4.9Mb
installed package size
installed size is 13.5Mb
sub-directories of 1Mb or more:
R 3.8Mb
data 3.0Mb
libs 4.7Mb
installed package size
installed size is 8.3Mb
sub-directories of 1Mb or more:
R 2.7Mb
data 2.4Mb
libs 1.3Mb
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/mappoly.Rcheck/00install.out' for details.
installed package size
installed size is 12.6Mb
sub-directories of 1Mb or more:
R 2.7Mb
data 3.0Mb
libs 4.9Mb
installed package size
installed size is 13.5Mb
sub-directories of 1Mb or more:
R 3.8Mb
data 3.0Mb
libs 4.7Mb
installed package size
installed size is 8.3Mb
sub-directories of 1Mb or more:
R 2.7Mb
data 2.4Mb
libs 1.3Mb
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 12.6Mb
sub-directories of 1Mb or more:
R 2.7Mb
data 3.0Mb
libs 4.9Mb
installed package size
installed size is 13.5Mb
sub-directories of 1Mb or more:
R 3.8Mb
data 3.0Mb
libs 4.7Mb
installed package size
installed size is 8.3Mb
sub-directories of 1Mb or more:
R 2.7Mb
data 2.4Mb
libs 1.3Mb