polyqtlR
QTL Analysis in Autopolyploid Bi-Parental F1 Populations
Description
Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in autopolyploid bi-parental F1 populations. For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated. Significance thresholds, exploring QTL allele effects and visualising results are provided. For more background and to reference the package see <doi:10.1093/bioinformatics/btab574>.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
package dependencies
Package required but not available: ‘Hmisc’ Packages suggested but not available for checking: 'mappoly', 'polymapR' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 2, 2026
ERROR 11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 25, 2026
examples
Running examples in ‘polyqtlR-Ex.R’ failed
The error most likely occurred in:
> ### Name: thinmap
> ### Title: Thin out map data
> ### Aliases: thinmap
>
> ### ** Examples
>
> data("phased_maplist.4x","SNP_dosages.4x")
> maplist_thin<-thinmap(mapl
...[truncated]...
le 93 on LG1 were included.
89 markers from a possible 93 on LG2 were included.
Error in loadNamespace(x) : there is no package called ‘polymapR’
Calls: thinmap ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
data 2.6Mb
doc 1.8Mb
libs 1.4Mb
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
data 2.6Mb
doc 1.8Mb
libs 1.5Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
data 2.6Mb
doc 1.8Mb
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/polyqtlR.Rcheck/00install.out' for details.
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
data 2.6Mb
doc 1.8Mb
libs 1.4Mb
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
data 2.6Mb
doc 1.8Mb
libs 1.5Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
data 2.6Mb
doc 1.8Mb
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
data 2.6Mb
doc 1.8Mb
libs 1.4Mb
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
data 2.6Mb
doc 1.8Mb
libs 1.5Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
data 2.6Mb
doc 1.8Mb