junctions
The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages
v2.1.4
·
Mar 7, 2026
·
GPL (>= 2)
Description
Individual based simulations of hybridizing populations, where the accumulation of junctions is tracked. Furthermore, mathematical equations are provided to verify simulation outcomes. Both simulations and mathematical equations are based on Janzen (2018, <doi:10.1101/058107>) and Janzen (2022, <doi:10.1111/1755-0998.13519>).
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CRAN Check Status
14
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 4, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 28, 2026
ERROR
r-release-linux-x86_64
tests
Running ‘testthat.R’ [14s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(junctions)
Loading required package: RcppParallel
>
> test_check("junctions")
Saving _problems/test-unphased-37
...[truncated]...
-unphased.R:37:3'): unphased, use ─────────────────────────────
Expected `ll_100` >= `ll_2000`.
Actual comparison: -192.0 < -154.6
Difference: -37.3 < 0
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 120 ]
Error:
! Test failures.
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
Reverse Dependencies (1)
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Version History
new
2.1.4
Mar 10, 2026
new
1.0
Jan 16, 2018