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GenomeAdmixR

Simulate Admixture of Genomes

v2.1.13.2 · May 14, 2026 · GPL (>= 2)
CRAN GitHub Mirror

Description

Individual-based simulations forward in time, simulating how patterns in ancestry along the genome change after admixture. Full description can be found in Janzen (2021) <doi:10.1111/2041-210X.13612>.

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CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 22, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 20, 2026
ERROR r-release-windows-x86_64

tests

Running 'testthat.R' [55s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(GenomeAdmixR) # nolint
  > 
  > test_check("GenomeAdmixR")
  Saving _problems/test-simulate_admixture_data-200.R
  [ FAIL 1 
...[truncated]...
ta.R:200:3'): simulate_admixture_data_recombination_map ──
  Expected `all_j` to equal `expected_num_j`.
  Differences:
  1/1 mismatches
  [1] 69 - 100 == -31
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 463 ]
  Error:
  ! Test failures.
  Execution halted
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.2Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/GenomeAdmixR.Rcheck/00install.out' for details.
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.2Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.2Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 8, 2026
ERROR r-devel-linux-x86_64-debian-gcc

tests

Running ‘testthat.R’ [40s/46s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(GenomeAdmixR) # nolint
  > 
  > test_check("GenomeAdmixR")
  Saving _problems/test-simulate_admixture_data-212.R
  [ FAI
...[truncated]...
ta.R:212:3'): simulate_admixture_data_recombination_map ──
  Expected `all_j` to equal `expected_num_j`.
  Differences:
  1/1 mismatches
  [1] 71 - 100 == -29
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 464 ]
  Error:
  ! Test failures.
  Execution halted
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.2Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 18, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.2Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 11, 2026
ERROR r-patched-linux-x86_64

tests

Running ‘testthat.R’ [59s/76s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(GenomeAdmixR) # nolint
  > 
  > test_check("GenomeAdmixR")
  Saving _problems/test-simulate_admixture_data-212.R
  [ FAI
...[truncated]...
ta.R:212:3'): simulate_admixture_data_recombination_map ──
  Expected `all_j` to equal `expected_num_j`.
  Differences:
  1/1 mismatches
  [1] 68 - 100 == -32
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 464 ]
  Error:
  ! Test failures.
  Execution halted
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.2Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    libs   4.2Mb

Dependency Network

Dependencies Reverse dependencies ggplot2 ggridges hierfstat Rcpp RcppParallel rlang stringr tibble vcfR GenomeAdmixR

Version History

11 tracked
updated 2.1.13.2 ← 2.1.12 diff May 14, 2026
new 2.1.12 Mar 10, 2026
updated 2.1.12 ← 2.1.11 diff Jun 19, 2025
updated 2.1.11 ← 2.1.10 diff May 19, 2025
updated 2.1.10 ← 2.1.7 diff May 15, 2025
updated 2.1.7 ← 2.1.2 diff Feb 28, 2022
updated 2.1.2 ← 2.1.1 diff Jan 14, 2022
updated 2.1.1 ← 2.0.2 diff Mar 29, 2021
updated 2.0.2 ← 1.1.3 diff Feb 25, 2021
updated 1.1.3 ← 1.1.2 diff Jan 24, 2021
new 1.1.2 Jan 20, 2021