Coercion Methods for Simplicial Complex Data Structures
Overview
Computational topology, which enables topological data analysis (TDA), makes pervasive use of abstract mathematical objects called simplicial complexes; see Edelsbrunner and Harer (2010) doi:10.1090/mbk/069. Several R packages and other software libraries used through an R interface construct and use data structures that represent simplicial complexes, including mathematical graphs viewed as 1-dimensional complexes. This package provides coercers (converters) between these data structures. Currently supported structures are complete lists of simplices as used by 'TDA'; the simplex trees of Boissonnat and Maria (2014) doi:10.1007/s00453-014-9887-3 as implemented in 'simplextree' and in Python GUDHI (by way of 'reticulate'); and the graph classes of 'igraph' and 'network', by way of the 'intergraph' package.
Per updated CRAN requirements, this patch moves several packages that are used in converters from Suggests: to Imports:.
It relieves the previously imposed conditions on tests (though not on examples) that use them. The exceptions are {TDA} and {igraphdata}, which are not used by any converters.
The patch also removes the @docType {roxygen2} tag in favor of "_PACKAGE" and fixes a broken code link and several URLs.
Finally, it uses utils::getFromNamespace() to invoke commands from {simplextree} v0.9.1 that were discontinued it v1.0.0.
From NEWS.md in the release
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- 6includes a package overview page
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- 80%4 run in a plain check (4 of them under a condition) · 1 never run
- Exported functions with examples
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- RR 4.6.0 released · 2026-04-24
- archivedRemoved from CRAN2026-01-29requires archived package 'simplextree'
- RR 4.5.0 released · 2025-04-11
- RR 4.4.0 released · 2024-04-24
- unarchivedReturned to CRAN2024-02-20
- 0.1.22024-02-20 · diff ↗
- RR 4.3.0 released · 2023-04-21
- archivedRemoved from CRAN2023-02-06issues were not corrected in time Does not use Suggest-ed packages conditionally
- 0.1.02022-06-21
- RR 4.2.0 released · 2022-04-22
Package metadata
- First published
- 2022-06-21
- Total releases
- 2 / 4 yrs
- License
- GPL (>= 3) OSI
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