R Observatory: Metrics for icmstate version 0.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

icmstate

0.2.0Package record

Interval Censored Multi-State Models

0packages depend

2.2Kdownloads / year

45.9%test coverage

13/13flavors OK

Overview

About

Maintained by Daniel GomonCRAN page ↗

Allows for the non-parametric estimation of transition intensities in interval-censored multi-state models using the approach of Gomon and Putter (2024) doi:10.48550/arXiv.2409.07176 or Gu et al. (2023) doi:10.1093/biomet/asad073.

Changes in 0.2.0

Introduced the smoothmsm() function - still in development
Fixes for future igraph compatibility - graph_from_adjacency_matrix no longer accepts NA inputs.

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("icmstate", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-icmstate

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-icmstate

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-icmstate

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 10.8 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-05-20
ERROR12 OK, 1 ERROR2026-05-19
OK12 OK2026-04-25

Show 2 earlier changesHide 2 earlier changes

ERROR13 OK, 1 ERROR2026-03-30
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.0

READMEYes · 229 wordsVignettesYes · 3 · dynamicNEWSYes · 100% structured · mentions 0.2.0Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 56 (18 internal)includes a package overview page
Examples that run: 95%20 run in a plain check · 1 never run
Exported functions with examples: 69%
Documented parameters: 100%
Return-value docs: 96%
Help pages citing references: 21%

Vignettes (3)

How these are measured

Downloads

2.2K

CRAN downloads in the past year

Rank #19,418 · ~6/day · ~187/mo

Releases R versions

Daily download trend is not available in this view yet.

23730 days

67190 days

2.2K1 year

Compare downloads with other packages →

Also on359 r2u8 autocran

How downloads are counted

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Installing icmstate adds 67 packages (39 with compiled code, 63 MB of source tarballs). Heaviest: ggplot2 6.0 MB, data.table 5.7 MB, igraph 4.8 MB.

Depends (0)

none

Imports (10)

Rcpp mstate prodlim igraph checkmate ggplot2 deSolve msmsurvivalJOPS

LinkingTo (1)

Rcpp

Suggests (7)

testthat icenReg profvis knitr rmarkdown bookdown latex2exp

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (2)

Daniel Gomon

Author, Maintainer since 0.1.0 (2024)

Hein Putter

Author

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.2.0Latest
record
2025-07-04 · current release · diff ↗ ·
added 6 exports
bbase_D, bbase_singletime, extend_msfit, predict_tp, probtrans_coxph, smoothmsm
R
R 4.5.0 released · 2025-04-11
0.1.1
record
2024-11-09 · diff ↗
0.1.0
record
2024-10-28
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-10-28
Total releases: 3 / 2 yrs
License: GPL (>= 2) OSI
Download size: 834 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("icmstate")

Format

Gomon, D., & Putter, H. (2025). icmstate: Interval Censored Multi-State Models (Version 0.2.0) [Computer software]. https://doi.org/10.32614/CRAN.package.icmstate

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for icmstate version 0.2.0 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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