R Observatory: Metrics for icenReg version 2.0.16

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

icenReg

2.0.16Package record

Regression Models for Interval Censored Data

10packages dependsuggested by 6

90.3Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Clifford Anderson-BergmanCRAN page ↗

Regression models for interval censored data. Currently supports Cox-PH, proportional odds, and accelerated failure time models. Allows for semi and fully parametric models (parametric only for accelerated failure time models) and Bayesian parametric models. Includes functions for easy visual diagnostics of model fits and imputation of censored data.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("icenReg", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-icenreg

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-icenReg

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-icenReg

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Clifford Anderson-Bergman <pistacliffcho@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Clifford",
                    family = "Anderson-Bergman",
                    role = c("aut", "cre"),
                    email = "pistacliffcho@gmail.com")
as necessary.

CRAN check page ↗

Slowest check: 6.6 min · r-devel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-06-09
WARNING11 OK, 1 NOTE, 1 WARNING2026-06-08
NOTE10 OK, 4 NOTE2026-04-22
ERROR9 OK, 4 NOTE, 1 ERROR2026-04-18
NOTE10 OK, 4 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.16

READMENoVignettesYes · 1 · dynamicNEWSYes · 100% structuredCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Cites a JSS article

Help pages: 25
Examples that run: 100%20 run in a plain check
Exported functions with examples: 77%
Documented parameters: 99%
Return-value docs: 0%
Help pages citing references: 20%

Vignettes (1)

Using icenReg PDF

How these are measured

Downloads

90.3K

CRAN downloads in the past year

Rank #1,432 · ~247/day · ~7.5K/mo

Releases R versions

Daily download trend is not available in this view yet.

5.5K30 days

18.5K90 days

90.3K1 year

Compare downloads with other packages →

Also on667 r2u6 autocran2K conda_forge138 c2d4u

How downloads are counted

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing icenReg adds 6 packages (3 with compiled code, 4.0 MB of source tarballs). Heaviest: Rcpp 1.8 MB, RcppEigen 1.7 MB, iterators 293 KB.

Depends (3)

survivalRcpp coda

Imports (3)

foreachmethodsMLEcens

LinkingTo (2)

Rcpp RcppEigen

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

10direct

11indirect

Depends 1 · Imports 9

Suggested by 6

Show all 16 packagesHide all 16 packages

Depends, Imports or LinkingTo, most downloaded first

mlt CopulaCenR qrcm mable iclogcondist LTRCtrees cenROC ICcalib ICcforest sMSROC

Suggests, most downloaded first

rms mets tram icensBKL EDI icmstate

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (1)

Clifford Anderson-Bergman

Maintainer since 1.0 (2015)

Listed in earlier versions (3)

Show 3 peopleHide 3 people

uses Maarloes Maathius's HeightMap algorithm

no longer listed · 1.2.8 to 1.3.1

the Eigen team for Eigen library included

no longer listed · 1.2.8 to 1.3.3

uses Marloes Maathuis's HeightMap algorithm

no longer listed · 1.3.2 to 2.0.0

Releases (30)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.0.16Latest
record
2024-01-13 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
2.0.15
record
2020-10-04 · diff ↗
2.0.14
record
2020-05-27 · diff ↗
R
R 4.0.0 released · 2020-04-24
2.0.13
record
2019-12-16 · diff ↗
2.0.11
record
2019-11-10 · diff ↗
2.0.10
record
2019-05-29 · diff ↗
R
R 3.6.0 released · 2019-04-26
2.0.9
record
2018-10-15 · diff ↗ ·
added 2 exports
ir_clustBoot, simIC_cluster
2.0.8
record
2018-07-15 · diff ↗ ·
added 2 exports
plot.icenReg_fit, lines.icenReg_fit

Show 26 earlier eventsHide 26 earlier events

R
R 3.5.0 released · 2018-04-23
2.0.7
record
2017-12-07 · diff ↗
2.0.6
record
2017-11-06 · diff ↗
2.0.4
record
2017-10-04 · diff ↗
2.0.3
record
2017-09-02 · diff ↗
2.0.2
record
2017-08-05 · diff ↗
R
R 3.4.0 released · 2017-04-21
2.0.1
record
2017-04-19 · diff ↗ ·
added 2 exports
sampleSurv, survCIs
2.0.0
record
2017-03-18 · diff ↗ ·
added 5 exports
cs2ic, simDC_weib, ic_sample, ic_bayes, bayesControls
1.3.6
record
2016-09-03 · diff ↗ ·
added 2 exports
makeCtrls_icsp, simCS_weib
1.3.5
record
2016-05-23 · diff ↗
R
R 3.3.0 released · 2016-05-03
1.3.4
record
2016-03-19 · diff ↗ ·
added 1 export
ic_np
1.3.3
record
2016-01-07 · diff ↗
1.3.2
record
2016-01-05 · diff ↗ ·
removed 5 exports
icenReg_cv, abs_inv, optCliq, ICNPMLE, simBVCen
1.3.1
record
2015-12-10 · diff ↗ ·
added 3 exports
imputeCens, icenReg_cv, abs_inv
1.2.8
record
2015-10-28 · diff ↗ ·
added 3 exports
optCliq, ICNPMLE, simBVCen
1.2.7
record
2015-07-20 · diff ↗
1.2.5
record
2015-06-27 · diff ↗
1.2.4
record
2015-06-04 · diff ↗
1.2.3
record
2015-06-03 · diff ↗
1.2.0
record
2015-05-31 · diff ↗ ·
removed 3 exports
ic_ph, impute_ic_ph, simICPH_beta

added 6 exports
ic_sp, simIC_weib, getFitEsts, diag_covar, diag_baseline, ic_par
1.1.1
record
2015-05-11 · diff ↗
1.1
record
2015-04-29 · diff ↗
1.0
record
2015-04-28
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-04-28
Total releases: 30 / 11 yrs
License: LGPL (>= 2.0, < 3) · relicensed from GPL-2 in 1.2.8
Bundled data: 2.1 KB / 2 files
Download size: 1.3 MB

Appears in task views

Missing Data Survival Analysis

Cite

Cite this package

Run in R for the authors' entry:

citation("icenReg")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.18637/jss.v081.i12.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for icenReg version 2.0.16 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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