R Observatory: Metrics for heattree version 0.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

heattree

0.3.1Package record

A Self-Contained Widget for Interactive Phylogenetic Tree Visualization

0packages depend

1Kdownloads / year

63.9%test coverage

13/13flavors OK

Overview

About

Maintained by Zachary FosterCRAN page ↗Website ↗Declared funder: USDA Agricultural Research Service

Creates self-contained widgets for interactive phylogenetic tree visualization. This package wraps the 'JavaScript' 'heat-tree' package using the 'htmlwidgets' R package.

Changes in 0.3.1

The first stable version released on CRAN.

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("heattree", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-heattree

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-heattree

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-heattree

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 56 s · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK7 OK2026-05-05

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.3.1

READMEYes · 613 wordsVignettesNoNEWSYes · 33% structured · mentions 0.3.1Citation fileNoWebsiteYes · pkgdown

The repository also keeps web-only articles.

Help pages: 7
Examples that run: 100%1 run in a plain check
Exported functions with examples: 50%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

1K

CRAN downloads in the past year

Rank #23,267 · ~3/day · ~85/mo

Releases R versions

Daily download trend is not available in this view yet.

21230 days

53990 days

1K1 year

Compare downloads with other packages →

Also on30 r2u3 autocran213 bioconda

How downloads are counted

Repository

grunwaldlab/heattree ↗Organization: grunwaldlab

4Stars

0Forks

3Open issues

0Open PRs

3Releases

45Commits

2Commit identities

45 commits · Last activity 2026-05-08 · +33.3% stars, 30d

Responsiveness

not measured

Stars over time

2026-04-16 · 12026-10-03 · 4

How these are measured

PracticesBeta

9 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/grunwaldlab/heattree on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-05-08 · The repository has a site deploy workflow

pkgdown site last built 2026-05-08

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Show all practicesHide 1 practice

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

AI coding toolsBeta

This repository shows signs of AI coding tools.

Aiderfirst seen 2026-01-07
Seen in the repository: .aider.conf.yml
Named in .Rbuildignore: .aider.conf.yml
Named in .gitignore: .aider*
Claude Codefirst seen 2026-04-24
Named in .Rbuildignore: .claude

How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Installing heattree adds 28 packages (16 with compiled code, 22 MB of source tarballs). Heaviest: bslib 5.6 MB, sass 2.9 MB, rmarkdown 2.1 MB.

Depends (1)

R >= 3.5

Imports (2)

ape htmlwidgets

LinkingTo (0)

none

Suggests (2)

testthat knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Zachary Foster

Author, Maintainer since 0.3.1 (2026)

Niklaus Grunwald

Author

USDA Agricultural Research Service

Funder

Releases (1)

0.3.1Latest
record
2026-05-04 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-05-04
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5
Bundled data: 18 KB / 5 files
Download size: 376 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("heattree")

Format

Foster, Z., USDA Agricultural Research Service, & Grunwald, N. (2026). heattree: A Self-Contained Widget for Interactive Phylogenetic Tree Visualization (Version 0.3.1) [Computer software]. https://doi.org/10.32614/CRAN.package.heattree

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for heattree version 0.3.1 [Data set]. HJJB, LLC. Data release v2026-10-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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