R Observatory: Metrics for harrietr version 0.2.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

harrietr

0.2.3Package record

Wrangle Phylogenetic Distance Matrices and Other Utilities

0packages depend

3.2Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Anders Gonçalves da SilvaCRAN page ↗GitHub ↗Issues ↗

Harriet was Charles Darwin's pet tortoise (possibly). 'harrietr' implements some function to manipulate distance matrices and phylogenetic trees to make it easier to plot with 'ggplot2' and to manipulate using 'tidyverse' tools.

Changes in 0.2.3

Fix major bug in long_dist function.
Updated join_metadata function to use tidyeval semantics used in dplyr
Moved README imates to man/figures to comply with CRAN policy

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("harrietr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("andersgs/harrietr")

Development version from andersgs/harrietr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-harrietr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.8 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-10

Show 2 earlier changesHide 2 earlier changes

ERROR12 OK, 1 ERROR2026-05-03
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.3

READMEYes · 618 wordsVignettesNoNEWSYes · 67% structured · mentions 0.2.3Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 8includes a package overview page
Examples that run: 0%4 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 75%
Help pages citing references: 0%

How these are measured

Downloads

3.2K

CRAN downloads in the past year

Rank #11,882 · ~9/day · ~268/mo

Releases R versions

Daily download trend is not available in this view yet.

30130 days

92590 days

3.2K1 year

Compare downloads with other packages →

Also on141 r2u

How downloads are counted

Repository

andersgs/harrietr ↗Account: andersgsArchived

12Stars

3Forks

1Open issues

0Open PRs

4Releases

51Commits

2Commit identities

rphylogeneticsevolutionbioinformatics

License file reads as GPL-3.0 · 51 commits · Last activity 2018-03-04 · Default branch at 0.2.4, ahead of CRAN 0.2.3 (checked 2026-10-21)

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 1

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/andersgs/harrietr on 2026-10-21.

Continuous integration (1)

Travis CI (config file)

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing harrietr adds 24 packages (16 with compiled code, 21 MB of source tarballs). Heaviest: stringi 11 MB, Rcpp 1.8 MB, ape 1.4 MB. 1 more not on CRAN is not measured.

Depends (1)

R >= 3.3.0

Imports (7)

ape ggtree magrittr lazyeval dplyr tidyr rlang (>= 0.1.2)

LinkingTo (0)

none

Suggests (1)

ggplot2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Anders Gonçalves da Silva

Author, Maintainer since 0.2.2 (2017)

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.2.3Latest
record
2017-12-01 · current release · diff ↗
R
R 3.4.0 released · 2017-04-21
0.2.2
record
2017-02-22
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-02-22
Total releases: 2 / 9 yrs
License: GPL-3 | file LICENSE OSI
Minimum R: ≥ 3.3.0
Bundled data: 1.9 KB / 3 files
Download size: 359 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("harrietr")

Format

Gonçalves da Silva, A. (2017). harrietr: Wrangle Phylogenetic Distance Matrices and Other Utilities (Version 0.2.3) [Computer software]. https://doi.org/10.32614/CRAN.package.harrietr

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for harrietr version 0.2.3 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →