R Observatory: Metrics for haploReconstruct version 0.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2021-04-08. Its history is shown below.

Reason: check problems were not corrected in time

Details below reflect version 0.1.2, its last release before removal.

haploReconstruct

0.1.2

Reconstruction of Haplotype-Blocks from Time Series Data

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Susanne U. Franssen1 releasesCRAN page ↗

Reconstruction of founder haplotype blocks from time series data.

Install

R (source archive)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/haploReconstruct/haploReconstruct_0.1.2.tar.gz"
pkgFile <- "haploReconstruct_0.1.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-haploReconstruct

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

10

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 38%

Downloads

haploReconstruct Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on13 autocran

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.2.2data.table

Imports (9)

igraph foreach zoo stringi matrixStats gplotsstatsdbscanmethods

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Other (3)

Susanne U. Franssen

Contributor

Nicholas H. Barton

Contributor

Christian Schloetterer

Contributor

Package Timeline

1 release. R releases are shown for context.

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2021-04-08
check problems were not corrected in time
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
0.1.2
2016-10-10
R
R 3.3.0 released · 2016-05-03

Package metadata

Total releases: 1
License: GPL-3 OSI
Minimum R: ≥ 3.2.2
Bundled data: 4.7 MB / 2 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("haploReconstruct")

Format

Franssen, S. U., Barton, N. H., & Schloetterer, C. (n.d.). haploReconstruct: Reconstruction of Haplotype-Blocks from Time Series Data (Version 0.1.2) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=haploReconstruct

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for haploReconstruct version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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