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hagis

Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

v4.0.0 · Jul 25, 2025 · MIT + file LICENSE
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Description

Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Löwer and Schachtel's (1999) <doi:10.1046/j.1365-3059.1999.00325.x> Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.

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r-devel-linux-x86_64-debian-clang OK
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r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies data.table ggplot2 pander hagis

Version History

new 4.0.0 Mar 10, 2026
updated 4.0.0 ← 3.1.12 diff Jul 25, 2025
updated 3.1.12 ← 3.1.11 diff May 15, 2024
updated 3.1.11 ← 3.1.6 diff Sep 5, 2023
updated 3.1.6 ← 3.1.4 diff Apr 24, 2023
updated 3.1.4 ← 3.1.3 diff Aug 14, 2022
updated 3.1.3 ← 3.1.2 diff Oct 13, 2021
updated 3.1.2 ← 3.1.1 diff Sep 29, 2021
updated 3.1.1 ← 3.1.0 diff Dec 8, 2020
updated 3.1.0 ← 3.0.1 diff Oct 6, 2020
updated 3.0.1 ← 3.0.0 diff Nov 17, 2019
updated 3.0.0 ← 2.0.0 diff Aug 25, 2019
new 2.0.0 Jun 23, 2019