R Observatory: Metrics for graphpcor version 0.1.25

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

graphpcor

0.1.25Package record

Models for Correlation Matrices Based on Graphs

0packages depend

1.8Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Elias Teixeira KrainskiCRAN page ↗

Implement some models for correlation/covariance matrices including two approaches to model correlation matrices from a graphical structure. One use latent parent variables as proposed in Sterrantino et. al. (2024) doi:10.1007/s10260-025-00788-y. The other uses a graph to specify conditional relations between the variables. The graphical structure makes correlation matrices interpretable and avoids the quadratic increase of parameters as a function of the dimension. In the first approach a natural sequence of simpler models along with a complexity penalization is used. The second penalizes deviations from a base model. These can be used as prior for model parameters, considering C code through the 'cgeneric' interface for the 'INLA' package (https://www.r-inla.org). This allows one to use these models as building blocks combined and to other latent Gaussian models in order to build complex data models.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("graphpcor", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-graphpcor

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-graphpcor

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-graphpcor

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK6 OK2026-05-08
ERROR6 OK, 1 ERROR2026-03-24

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.25

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 18
Examples that run: 100%4 run in a plain check
Exported functions with examples: 44%
Documented parameters: 100%
Return-value docs: 78%
Help pages citing references: 17%

Also includes 8 demo scripts (run with demo())

Vignettes (1)

Tree based latent variables correlation model

How these are measured

Downloads

1.8K

CRAN downloads in the past year

Rank #15,268 · ~5/day · ~154/mo

Releases R versions

Daily download trend is not available in this view yet.

22030 days

80890 days

1.8K1 year

Compare downloads with other packages →

Also on401 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing graphpcor adds 11 packages (7 with compiled code, 8.1 MB of source tarballs). Heaviest: igraph 4.8 MB, vctrs 1.0 MB, rlang 766 KB.

Depends (4)

R >= 4.3MatrixINLAtools numDeriv

Imports (4)

methodsstatsutilsigraph

LinkingTo (0)

none

Suggests (2)

knitr INLA

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (5)

Elias Teixeira Krainski

Anna Freni-Sterrantino

Author, Copyright holder

Haavard Rue’

Author

Denis Rustand

Author, Copyright holder

Janet van Niekerk

Author, Copyright holder

Listed in earlier versions (2)

Krainski

no longer listed · 0.1.11 to 0.1.12

Teixeira Krainski

no longer listed · 0.1.15 to 0.1.25

Releases (5)

Pick two releases to compare their code metrics.

unarchivedReturned to CRAN
2026-05-07
0.1.25Latest
record
2026-05-07 · current release · diff ↗ ·
removed 1 export
drop1

added 2 exports
gphcQ, tpcQ
R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2026-04-23
requires archived package 'INLAtools'
unarchivedReturned to CRAN
2026-03-23
0.1.24
record
2026-03-23 · diff ↗ ·
added 3 exports
drop1, edges, stan_add
archivedRemoved from CRAN
2026-01-29
issues were not corrected in time
0.1.15
record
2026-01-15 · diff ↗ ·
removed 13 exports
Lprec, cgeneric, cgeneric_graphpcor, cgeneric_treepcor, graph, initial, is.zero, mu, prec, prior, rcorrel, rgeneric, theta2correl

added 3 exports
basecor, basepcor, cholcor
0.1.12
record
2025-04-27 · diff ↗
0.1.11
record
2025-04-19
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-04-19
Total releases: 5 / 1 yrs
License: GPL (>= 2) OSI
Additional repositories: inla.r-inla-download.org
Minimum R: ≥ 4.3
Download size: 550 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("graphpcor")

Format

Teixeira Krainski, E., Freni-Sterrantino, A., Rue’, H., Rustand, D., & van Niekerk, J. (2026). graphpcor: Models for Correlation Matrices Based on Graphs (Version 0.1.25) [Computer software]. https://doi.org/10.32614/CRAN.package.graphpcor

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for graphpcor version 0.1.25 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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