R Observatory: Metrics for gllvm version 2.0.13

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

gllvm

2.0.13

Generalized Linear Latent Variable Models

1packages depend

12Kdownloads / year

33.5%test coverage

13/13checks pass

Overview

About

Maintained by Jenni NikuFirst published 2017-12-2023 releasesCRAN page ↗GitHub ↗

Analysis of multivariate data using generalized linear latent variable models (gllvm). Estimation is performed using either the Laplace method, variational approximations, or extended variational approximations, implemented via TMB (Kristensen et al. (2016), doi:10.18637/jss.v070.i05).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("gllvm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("JenniNiku/gllvm")

Development version from JenniNiku/gllvm. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gllvm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-gllvm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-gllvm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 27.6 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.03

33.5%

Coverage · measured lines

100%

Documentation · exports

8

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-24
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 7 earlier snapshots

ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-12
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-05-11
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-24
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-23
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 592 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 28%
Documented parameters: 57%
Return-value docs: 41%
References docs: 28%

Downloads

12K

CRAN downloads in the past year

Rank #3,400 · ~33/day · ~1K/mo

Releases R versions

Daily download trend is not available in this view yet.

69930 days

3.1K90 days

12K1 year

Compare downloads with other packages →

Also on515 r2u24 autocran32 c2d4u

Repository

GitHub ↗ jenniniku/gllvm

62Stars

23Forks

13Open issues

0Open PRs

4Releases

2,086Commits

12Contributors

2,086 commits · Last activity 2026-08-20 · 0% stars, 30d

Stars over time

2025-08-21 · 592026-07-07 · 62

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/jenniniku/gllvm on 2026-08-23.

Reproducibility and dev environment (1)

data-raw/

Research and citation (1)

CITATION.cff

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.5.0TMB

Imports (7)

MASSMatrixfishModmgcvalabama nloptrmethods

LinkingTo (3)

TMB Rcpp RcppEigen

Suggests (9)

knitr rmarkdown testthat gclus corrplotlatticemvabund apeparallel

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

ecostats

Code & Tests

Datasets

People & History

People (8)

Maintainer (1)

Jenni Niku

Author, Maintainer

Authors (8)

Author, Maintainer

Author

Author

Author

Author · added in 1.4.0

Sara Taskinen

Author

David I. Warton

Author

Bert van der Veen

Author · added in 1.2.3

Package Timeline

23 releases. Pick two to compare their code metrics. R releases are shown for context.

2.0.13Latest
2026-07-09 · current release · diff ↗
2.0.11
2026-06-22 · diff ↗
2.0.10
2026-05-10 · diff ↗
R
R 4.6.0 released · 2026-04-24
2.0.5
2025-07-13 · diff ↗
R
R 4.5.0 released · 2025-04-11
2.0.2
2025-04-08 · diff ↗
2.0.1
2025-04-01 · diff ↗
2.0
2024-11-26 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.4.3
2023-09-18 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.4.1
2023-01-07 · diff ↗
1.4.0
2022-12-17 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.3.1
2021-07-28 · diff ↗

Show 17 earlier events

R
R 4.1.0 released · 2021-05-18
1.3.0
2021-04-30 · diff ↗
1.2.3
2020-12-11 · diff ↗
1.2.2
2020-05-11 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.2.1
2020-01-23 · diff ↗
1.2.0
2019-12-20 · diff ↗
1.1.7
2019-09-17 · diff ↗
1.1.6
2019-08-23 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.1.3
2019-04-16 · diff ↗
1.1.2
2019-01-02 · diff ↗
1.1.0
2018-11-14 · diff ↗
1.0
2018-07-30 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.1.0
2017-12-20
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-12-20
Total releases: 23 / 9 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5.0
Bundled data: 178 KB / 6 files
Download size: 3.3 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Analysis of Ecological and Environmental Data Mixed, Multilevel, and Hierarchical Models in R

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("gllvm")

The authors publish a CITATION.cff, so they have said how they want this cited. Run citation() and use what it gives you.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for gllvm version 2.0.13 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →