R Observatory: Metrics for glioblastomaEHRsData version 1.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

glioblastomaEHRsData

1.1.0

Descriptive Analysis on Three Glioblastoma EHRs Datasets

0packages depend

2Kdownloads / year

92.8%test coverage

13/13checks pass

Overview

About

Maintained by Samuele MarelliFirst published 2025-09-212 releasesCRAN page ↗GitHub ↗

Provides functions to load and analyze three open Electronic Health Records (EHRs) datasets of patients diagnosed with glioblastoma, previously released under the Creative Common Attribution 4.0 International (CC BY 4.0) license. Users can generate basic descriptive statistics, frequency tables and save descriptive summary tables, as well as create and export univariate or bivariate plots. The package is designed to work with the included datasets and to facilitate quick exploratory data analysis and reporting. More information about these three datasets of EHRs of patients with glioblastoma can be found in this article: Gabriel Cerono, Ombretta Melaiu, and Davide Chicco, 'Clinical feature ranking based on ensemble machine learning reveals top survival factors for glioblastoma multiforme', Journal of Healthcare Informatics Research 8, 1-18 (March 2024). doi:10.1007/s41666-023-00138-1.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("glioblastomaEHRsData", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Samumar4321/glioblastomaEHRsData")

Development version from Samumar4321/glioblastomaEHRsData. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-glioblastomaehrsdata

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-glioblastomaEHRsData

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-glioblastomaEHRsData

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.1 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.37

92.8%

Coverage · measured lines

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 126 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 19%

Downloads

2K

CRAN downloads in the past year

Rank #21,486 · ~6/day · ~168/mo

Releases R versions

Daily download trend is not available in this view yet.

14730 days

51090 days

2K1 year

Compare downloads with other packages →

Also on75 r2u9 autocran

Repository

GitHub ↗ samumar4321/glioblastomaehrsdata

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-06-08

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/samumar4321/glioblastomaehrsdata on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (7)

DataExplorer flextable ggplot2 rmarkdown summarytools table1 tinytex

LinkingTo (0)

none

Suggests (2)

ragg testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Samuele Marelli

Author, Maintainer

Authors (2)

Samuele Marelli

Author, Maintainer

Davide Chicco

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.1.0Latest
2026-01-30 · current release · diff ↗
0.1.0
2025-09-21
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-09-21
Total releases: 2 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5
Bundled data: 6.1 KB / 3 files
Download size: 26 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("glioblastomaEHRsData")

Format

Marelli, S., & Chicco, D. (2026). glioblastomaEHRsData: Descriptive Analysis on Three Glioblastoma EHRs Datasets (Version 1.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.glioblastomaEHRsData

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for glioblastomaEHRsData version 1.1.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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